View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18999_low_3 (Length: 586)
Name: NF18999_low_3
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18999_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 5 - 570
Target Start/End: Original strand, 38885745 - 38886310
Alignment:
| Q |
5 |
ggtagataattctctaggttgggaccccatgaccccaaaaagggtaattcttcgaagttcttcattgaaagaaagatatccactttgctgtcatggggaa |
104 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38885745 |
ggtaaataagtctctaggttgggaccccatgaccccaaaaagggtaattcttcgaagttcttcattgaaagaaagatatccactttgctgtcatggggaa |
38885844 |
T |
|
| Q |
105 |
gaattgggggttgaggcaaagagtgaaaggattatagagagatggtttgtgcagtataagaataggaagataaaggattctgattctggaaccaggaggt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38885845 |
gaattgggggttgaggcaaagagtgaaaggattatagagagatggtttgtgcagtataagaataggaagataaaggattctgattctggaaccaggaggt |
38885944 |
T |
|
| Q |
205 |
caaacaattatttcttgcaaaacttgtataagaaatcaactttacttttgaggtctttgtatgccactgttcgacttttacccgcgtatagaattttcag |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38885945 |
caaacaattatttcttgcaaaacttgtataagaaatcaactttacttttgaggtctttgtatgccactgttcgacttttacccgcgtatagaattttcag |
38886044 |
T |
|
| Q |
305 |
agatcttaattcgtccgcaaagattcatccctttacccttgctcaccgagtatcttcttttgttgagcccttcacccgaaaagaagagtctgaaatgatg |
404 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38886045 |
agatcttaattcgtctgcaaagattcatccctttacccttgctcgccgagtatcttcttttgttgagcccttcacccgaaaagaagagtctgaaatgatg |
38886144 |
T |
|
| Q |
405 |
aaatataagtttactcctgtggatacttcttctggtagcctctgccttacggtgatgtattctccctcggcctcagatttgagctgtgatccattacctt |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38886145 |
aaatataagtttactcctgtggatacttcttctggtagcctctgccttacggtgatgtattctccctcggcctcagatttgagctgtgatccattacctt |
38886244 |
T |
|
| Q |
505 |
ctatgtccccgcaagttatttctgactatgttggaagtccattggcatctccattgaggaggttcc |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38886245 |
ctatgtccccgcaagttatttctgactatgttggaagtccattggcatctccattgaggaggttcc |
38886310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 43676953 - 43676886
Alignment:
| Q |
219 |
ttgcaaaacttgtataagaaatcaactttacttttgaggtctttgtatgccactgttcgacttttacc |
286 |
Q |
| |
|
||||| || |||||||||||||| ||||| ||||| |||||||||||||| |||||| | |||||||| |
|
|
| T |
43676953 |
ttgcagaatttgtataagaaatctactttgcttttaaggtctttgtatgctactgttaggcttttacc |
43676886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University