View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18999_low_31 (Length: 237)
Name: NF18999_low_31
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18999_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26471958 - 26471735
Alignment:
| Q |
1 |
caagcacttaatcataattggtattaaatattgcattaatctaacaaagaaggtag--gggattcgaagaatcataatcattgtctaacctctgaaacaa |
98 |
Q |
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| T |
26471958 |
caagcgcttaatcataattagtattaaatattacattaatccaataaagaagatagaggggattcgaagaatcctaatcatcgtctaacctctgaaacaa |
26471859 |
T |
|
| Q |
99 |
acattttacttttttgcaaacaactattactcgcattgacaaatcaaaagttcaaacccttaaacccctttaatgttgtcttaaattaaataggtatagc |
198 |
Q |
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| T |
26471858 |
accttttacttttttgcaaacaactattactcgcattgacaaatcaaaagttcaaacccttaaacccctttaatgttgtcttaaattaaataggtatagc |
26471759 |
T |
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| Q |
199 |
-aaatgcttcattgacgacaatcc |
221 |
Q |
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| T |
26471758 |
aaaatgcttcattgacgacaatcc |
26471735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 23294296 - 23294414
Alignment:
| Q |
8 |
ttaatcataattggtattaaatattgcattaatctaacaaagaag--gtaggggattcgaagaatcataatcattgtctaacctctgaaacaaacatttt |
105 |
Q |
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| T |
23294296 |
ttaatcataattagtattaaatattgcattactccgacaaagaagacaaagataatttgaagaatcctaatcaccgtctaacctatgaaacaaactcttt |
23294395 |
T |
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| Q |
106 |
acttttttgcaaacaacta |
124 |
Q |
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| T |
23294396 |
acttttctgcaaataacta |
23294414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 8839575 - 8839659
Alignment:
| Q |
137 |
acaaatcaaaagttcaaacccttaaacccctttaatgttgtcttaaattaaataggtatagcaaa-tgcttcattgacgacaatc |
220 |
Q |
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| T |
8839575 |
acaattcaaaagtgcaaatccttaaaccccttttttgctttcttagtttaaatagatatagcaaattgcttcgttgacgacaatc |
8839659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 38986542 - 38986455
Alignment:
| Q |
14 |
ataattggtattaaatattgcattaatctaacaaagaaggtag--gggattcgaagaatcataatcattgtctaacctctgaaacaaa |
99 |
Q |
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| T |
38986542 |
ataattggtattgaatattgagttaatctgacaaagaagatagaagagattcgaagaatcattatcacagtcaaaactctgaaacaaa |
38986455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 39017639 - 39017552
Alignment:
| Q |
14 |
ataattggtattaaatattgcattaatctaacaaagaaggtag--gggattcgaagaatcataatcattgtctaacctctgaaacaaa |
99 |
Q |
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|||||||||||| ||||||| ||||||| ||||||||| ||| | ||||||||||||||| |||| ||| || |||||||||||| |
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| T |
39017639 |
ataattggtattgaatattgagttaatctgacaaagaagatagaagagattcgaagaatcattatcacagtcaaaactctgaaacaaa |
39017552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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