View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18999_low_5 (Length: 563)

Name: NF18999_low_5
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18999_low_5
NF18999_low_5
[»] chr4 (4 HSPs)
chr4 (1-547)||(14349944-14350491)
chr4 (293-339)||(18404845-18404891)
chr4 (290-339)||(16581761-16581810)
chr4 (290-334)||(51954187-51954231)
[»] chr2 (3 HSPs)
chr2 (290-346)||(35203342-35203398)
chr2 (291-324)||(31159597-31159630)
chr2 (290-339)||(42222949-42222998)
[»] chr1 (4 HSPs)
chr1 (290-325)||(40257481-40257516)
chr1 (293-330)||(7129616-7129653)
chr1 (290-323)||(31297307-31297340)
chr1 (290-322)||(10526908-10526940)
[»] chr8 (2 HSPs)
chr8 (347-400)||(18897164-18897217)
chr8 (293-341)||(6569733-6569781)
[»] chr7 (2 HSPs)
chr7 (290-323)||(15905633-15905666)
chr7 (367-400)||(42295106-42295139)
[»] chr6 (1 HSPs)
chr6 (290-319)||(20678038-20678067)
[»] chr3 (1 HSPs)
chr3 (290-346)||(49397500-49397556)


Alignment Details
Target: chr4 (Bit Score: 524; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Original strand, 14349944 - 14350491
Alignment:
Q  1 aatataatagagggatattgatgtagaaacgacctctcataatgtttatgattttagtagctctcacttactgaattatacacatcacatgtattcatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14349944 aatataatagagggatattgatgtagaaacgacctctcataatgtttatgattttagtagctctcacttactgaattatacacatcacatgtattcatat 14350043  T
Q  101 tgcgaacaaactaactcagttgtatctaagtttaaactaagtttgtaacaactattaactaactacaataaaaatgtgatatgtaaatctaactatcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14350044 tgcgaacaaactaactcagttgtatctaagtttaaactaagtttgtaacaactattaactaactacaataaaaatgtgatatgtaaatctaactatcaat 14350143  T
Q  201 tgaaaacata-tctttatcacatcttgacatcttagtataaaatgtaaaccgaattatttggtgtgcccctcccgaatcagtaacacgtattgaagaagc 299  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14350144 tgaaaacataatctttatcacatcttgacatcttagtataaaatgtaaaccgaattatttggtgtgcccctcccgaatcagtaacacgtattgaagaagt 14350243  T
Q  300 taaactaacccacccaaattgacacctaagataatagaacatcagacgagcaaactctaatctcccaaaccaacaccactaacccaactcaagtgggttt 399  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14350244 taaattaacccacccaaattgacacctgagataatagaacatcagacgagcaaactctaatctcccaaaccaacaccactaacccaactcaagtgggttt 14350343  T
Q  400 aacagatagagtatcgagggctatcattgccgtttggttcaagcattcaactttccaccttgtactcctataactcttgaattcaacctcaaaacacaca 499  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14350344 aacagatagaatatcgagggctatcattgccgtttggttcaagcattcaactttccaccttgtactcctataactcttgaattcaacctcaaaacacaca 14350443  T
Q  500 attcaacattttctctttgtctttgactccttctacaattgaggatat 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14350444 attcaacattttctctttgtctttgactccttctacaattgaggatat 14350491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 18404845 - 18404891
Alignment:
Q  293 aagaagctaaactaacccacccaaattgacacctaagataatagaac 339  Q
    ||||||||||||||||||||  |||||||||||| ||||||| ||||    
T  18404845 aagaagctaaactaacccacttaaattgacaccttagataatcgaac 18404891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 16581810 - 16581761
Alignment:
Q  290 ttgaagaagctaaactaacccacccaaattgacacctaagataatagaac 339  Q
    ||||||||||||||||||||| | ||||||| ||||  ||||||||||||    
T  16581810 ttgaagaagctaaactaaccctctcaaattggcaccagagataatagaac 16581761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 51954231 - 51954187
Alignment:
Q  290 ttgaagaagctaaactaacccacccaaattgacacctaagataat 334  Q
    |||||||||||||| || ||||||||||||||||||  |||||||    
T  51954231 ttgaagaagctaaattagcccacccaaattgacaccggagataat 51954187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 35203342 - 35203398
Alignment:
Q  290 ttgaagaagctaaactaacccacccaaattgacacctaagataatagaacatcagac 346  Q
    |||||||||||||| ||||||||  ||||||||||| |||||||| |||||| ||||    
T  35203342 ttgaagaagctaaattaacccacttaaattgacaccaaagataatcgaacatgagac 35203398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 31159597 - 31159630
Alignment:
Q  291 tgaagaagctaaactaacccacccaaattgacac 324  Q
    |||||||||||||||| |||||||||||||||||    
T  31159597 tgaagaagctaaactagcccacccaaattgacac 31159630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 42222998 - 42222949
Alignment:
Q  290 ttgaagaagctaaactaacccacccaaattgacacctaagataatagaac 339  Q
    |||||||| ||||| ||||||||||||||||||||| |||| ||| ||||    
T  42222998 ttgaagaatctaaattaacccacccaaattgacaccgaagagaatcgaac 42222949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 325
Target Start/End: Complemental strand, 40257516 - 40257481
Alignment:
Q  290 ttgaagaagctaaactaacccacccaaattgacacc 325  Q
    ||||||||||||||||| ||||||||||||||||||    
T  40257516 ttgaagaagctaaactagcccacccaaattgacacc 40257481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 7129616 - 7129653
Alignment:
Q  293 aagaagctaaactaacccacccaaattgacacctaaga 330  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  7129616 aagaagctaaactaacccacctaaattgacaccgaaga 7129653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 31297340 - 31297307
Alignment:
Q  290 ttgaagaagctaaactaacccacccaaattgaca 323  Q
    ||||||||| ||||||||||||||||||||||||    
T  31297340 ttgaagaagttaaactaacccacccaaattgaca 31297307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 322
Target Start/End: Complemental strand, 10526940 - 10526908
Alignment:
Q  290 ttgaagaagctaaactaacccacccaaattgac 322  Q
    |||||||||||||| ||||||||||||||||||    
T  10526940 ttgaagaagctaaattaacccacccaaattgac 10526908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 18897217 - 18897164
Alignment:
Q  347 gagcaaactctaatctcccaaaccaacaccactaacccaactcaagtgggttta 400  Q
    ||||| |||||||  |||||||||||||||||||  ||||| ||||||||||||    
T  18897217 gagcacactctaaggtcccaaaccaacaccactaggccaacccaagtgggttta 18897164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 6569733 - 6569781
Alignment:
Q  293 aagaagctaaactaacccacccaaattgacacctaagataatagaacat 341  Q
    |||||||||||||||||| | |||||||||||| |||| ||| ||||||    
T  6569733 aagaagctaaactaaccccctcaaattgacaccaaagagaatcgaacat 6569781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 15905633 - 15905666
Alignment:
Q  290 ttgaagaagctaaactaacccacccaaattgaca 323  Q
    |||||||||||||| |||||||||||||||||||    
T  15905633 ttgaagaagctaaattaacccacccaaattgaca 15905666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 400
Target Start/End: Original strand, 42295106 - 42295139
Alignment:
Q  367 aaccaacaccactaacccaactcaagtgggttta 400  Q
    ||||||||||||||| ||||||||||||||||||    
T  42295106 aaccaacaccactaaaccaactcaagtgggttta 42295139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 319
Target Start/End: Original strand, 20678038 - 20678067
Alignment:
Q  290 ttgaagaagctaaactaacccacccaaatt 319  Q
    ||||||||||||||||||||||||||||||    
T  20678038 ttgaagaagctaaactaacccacccaaatt 20678067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 49397500 - 49397556
Alignment:
Q  290 ttgaagaagctaaactaacccacccaaattgacacctaagataatagaacatcagac 346  Q
    |||||||||||||| ||  ||||| ||||||||| |||||||||| |||||| ||||    
T  49397500 ttgaagaagctaaattagtccacctaaattgacatctaagataatcgaacatgagac 49397556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University