View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18999_low_6 (Length: 509)
Name: NF18999_low_6
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18999_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 15 - 492
Target Start/End: Original strand, 2024168 - 2024645
Alignment:
| Q |
15 |
agcataggaatcctcaaaggtatgaattcaaaataaaacaatgtatatgtaactgcaaacatatccatgctttcctcataaaacatgttatattgttcca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2024168 |
agcataggaatcctcaaaggtatgaattcaaaataaaacaatgtatatgtaactgcaaacatatccatgctttcctcataaaacatgttattttgttcca |
2024267 |
T |
|
| Q |
115 |
acactaacctatccaaaaaataacaaaaagaattaatagaaccaattgtactaacctcaaacttgatgatgctcaaattgaataaaaatccctcttgcat |
214 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2024268 |
acaccaacctatccaaaaaataacaaaaagagttaatagaaccaattgtactaacctcaaacttgatgatgctcaaattgaataaaaatccctcttacat |
2024367 |
T |
|
| Q |
215 |
aacatgtagtagttccaactgactgatcactttcaggaaaagcttcgacacatcttcttttccattaaaatgctacattatgagattgaccataaaaaac |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2024368 |
aacatgtagtagttccaactgactgatcactttcaggaaaagcttcgacacatcttcttttccattaaaatgctacattatgagattgaccgtaaaaaaa |
2024467 |
T |
|
| Q |
315 |
taataacaaaaatgagataagcatgaaagagctaccttttcattgagcaggagcatgtgcagacttccctcctcggctggattcgtatggtcaggaacac |
414 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2024468 |
taataacagaaatgagataagcatgaaagagctaccttttcatcgagcaggagcatgtgcagacttccctcctcggctggattcgtatggtcaggaacac |
2024567 |
T |
|
| Q |
415 |
tccataggcgaattactctagccgtcaatgtcagatcaatattcccacacttaattccttccacacgagtcatctttg |
492 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2024568 |
tccattggcgaattactctagccgtcaatgccagatcaatattcccacacttaattccttccacacgagtcatctttg |
2024645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 472
Target Start/End: Original strand, 23319814 - 23319881
Alignment:
| Q |
405 |
tcaggaacactccataggcgaattactctagccgtcaatgtcagatcaatattcccacacttaattcc |
472 |
Q |
| |
|
|||||||||||||| ||| ||||||| || | ||||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
23319814 |
tcaggaacactccacaggtgaattaccctgactgtcaatgccagatcagtattcccacacttgattcc |
23319881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 472
Target Start/End: Original strand, 23329981 - 23330048
Alignment:
| Q |
405 |
tcaggaacactccataggcgaattactctagccgtcaatgtcagatcaatattcccacacttaattcc |
472 |
Q |
| |
|
|||||||||||||| ||| ||||||| || | ||||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
23329981 |
tcaggaacactccacaggtgaattaccctgactgtcaatgccagatcagtattcccacacttgattcc |
23330048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 22005350 - 22005407
Alignment:
| Q |
164 |
actaacctcaaacttgatgatgctcaaattgaataaaaatccctcttgcataacatgt |
221 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||| | | |||||| |||||||| |
|
|
| T |
22005350 |
actaacctcaaacttgatgttgctcaaactgaatgaaagttcatcttgcttaacatgt |
22005407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University