View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18999_low_7 (Length: 455)
Name: NF18999_low_7
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18999_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 279 - 442
Target Start/End: Original strand, 14223430 - 14223593
Alignment:
| Q |
279 |
ttgtaaaattttatattttgaatgaaaacatagactgcaaatccttttcttttgatcaattggatttgggctcttatatctatattaaatagggtaaaac |
378 |
Q |
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| T |
14223430 |
ttgtaaaattttatattttgaatgaaaacatagactgcaattccttttcttttgatcaattggagttgggctcttaaatctatattaaatagggtaaaac |
14223529 |
T |
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| Q |
379 |
atttctagtcaatgttgcagacggctccgtagaatttgtactttgacaaatttatttggtctgt |
442 |
Q |
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| T |
14223530 |
atttctagtcaatgttgcagacggctccgtagaatttgtactttgacaaatttatttggtctgt |
14223593 |
T |
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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 14227833 - 14227905
Alignment:
| Q |
113 |
tcccttgagaacaagttcattgaacctatgcctgcaaggtttccttacgcattcgacctggtcatgttaataaa |
186 |
Q |
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| T |
14227833 |
tcccttgagaacaagtttattgaacctatgcctgcgaag-ttccttccgcatttgacctgatcatgttaataaa |
14227905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 14227927 - 14228004
Alignment:
| Q |
212 |
cttgtattcttttggcctagtttattcatacctaatcaggactattcaaagcttgtattgaagcaccttgtaaaattt |
289 |
Q |
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| T |
14227927 |
cttgtattcttttggcctcgtttattcgtttttaatcaggactggtctaagctagttttgaagctccttgtcaaattt |
14228004 |
T |
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