View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18999_low_8 (Length: 420)
Name: NF18999_low_8
Description: NF18999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18999_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 179 - 380
Target Start/End: Original strand, 1186343 - 1186545
Alignment:
| Q |
179 |
aatgcatatacttttgaggagtcaaactcttac-ttacttctcacatttgatatagactattttcgtgtgtttgtttttgcgtgccaccgtgcgtttttt |
277 |
Q |
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| T |
1186343 |
aatgcatatacttttgaggagtcaaactctttccttacttctcacatttcatatagactattttcgtgtgtttgttttcgcgtgccaccgtgcgtttttt |
1186442 |
T |
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| Q |
278 |
cacttctacaatctgtagcttcacaattatcacagcgagaagacattgagacacgagaaatatagtttgtatgcgtatccaaacgaacacttattatacc |
377 |
Q |
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| T |
1186443 |
cacttctacaatctgtagcttcacaattatcacagcgagaagacattgagacgcgagaaaaatagtttggatgcgtatccaaacgaacacttattatacc |
1186542 |
T |
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| Q |
378 |
aga |
380 |
Q |
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||| |
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| T |
1186543 |
aga |
1186545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 1006986 - 1007149
Alignment:
| Q |
16 |
atgaaaacaaaaattgaaaaggaatagaataataatacctagtgagttgacatctgaagagggatttggaagcggaatgtgaatgtgaattgaaggaaga |
115 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1006986 |
atgaaaacaaaaattgaaaaggaatagaagaataatacctagagagttgacatctgaagagggatttggaagcggaatgtgaatgtgaattgaaggaaga |
1007085 |
T |
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| Q |
116 |
acggtggcgccattaggggtttcatttggtgaatcatcatcagaagaagaatctgatacatcaa |
179 |
Q |
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| T |
1007086 |
acggtggcgacattaggggtttcatttggtgaatcatcagaagaagaagaatctgatacatcaa |
1007149 |
T |
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