View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19000_low_2 (Length: 260)

Name: NF19000_low_2
Description: NF19000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19000_low_2
NF19000_low_2
[»] chr3 (2 HSPs)
chr3 (16-242)||(8102626-8102852)
chr3 (16-240)||(40147093-40147317)
[»] chr6 (2 HSPs)
chr6 (112-240)||(6500653-6500781)
chr6 (130-171)||(11969168-11969209)
[»] chr4 (5 HSPs)
chr4 (111-239)||(7615418-7615546)
chr4 (112-238)||(7655961-7656087)
chr4 (106-239)||(7628789-7628922)
chr4 (106-238)||(7637236-7637368)
chr4 (106-164)||(7606479-7606537)
[»] chr7 (3 HSPs)
chr7 (111-218)||(8910985-8911092)
chr7 (111-239)||(8935924-8936052)
chr7 (126-164)||(8938715-8938753)
[»] chr8 (1 HSPs)
chr8 (151-231)||(15196011-15196091)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 8102852 - 8102626
Alignment:
Q  16 atatcttcccttcaagcactttttgcacacctttggtgctcagtgatccgttccgaccaattagagccacaagagaacgcatattttatggtcgggatag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8102852 atatcttcccttcaagcactttttgcacacctttggtgctcagtgatccgttccgaccaattagacccacaagagaacgcatattttatggtcgggatag 8102753  T
Q  116 gagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttggaaga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8102752 gagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttggaaga 8102653  T
Q  216 aggcgggcttggtaaatgtgcttggaa 242  Q
    ||||||| |||||||||||||||||||    
T  8102652 aggcgggtttggtaaatgtgcttggaa 8102626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 40147093 - 40147317
Alignment:
Q  16 atatcttcccttcaagcactttttgcacacctttggtgctcagtgatccgttccgaccaattagagccacaagagaacgcatattttatggtcgggatag 115  Q
    ||||| ||||| ||| |||||||| |||| |||||| |||| |||||||||||| | ||||| || ||||| ||  | |  |||| |||||||| |||||    
T  40147093 atatcatccctccaatcactttttacacatctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtttattatatggtcgcgatag 40147192  T
Q  116 gagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttggaaga 215  Q
    ||| ||||  ||||||||||||||||||||| ||||||||||||||||||||||||| || || || |||| |||||||||  || ||||||||||||||    
T  40147193 gagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagagttgttggaaga 40147292  T
Q  216 aggcgggcttggtaaatgtgcttgg 240  Q
     || |||||||||||| ||||||||    
T  40147293 tggtgggcttggtaaaggtgcttgg 40147317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 240
Target Start/End: Complemental strand, 6500781 - 6500653
Alignment:
Q  112 ataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttgg 211  Q
    ||||| ||||||| |||| ||||||||| ||| ||  ||||||||||||||||||||||  ||| || || ||||   ||||||| ||| ||||||||||    
T  6500781 ataggcgttagaccaaggcttgttccactattaccacaagattattttggaaatgctgtgatagattgtagggttagcatgaaagctggtgagttgttgg 6500682  T
Q  212 aagaaggcgggcttggtaaatgtgcttgg 240  Q
    ||||||||||| |||||||| ||||||||    
T  6500681 aagaaggcgggattggtaaaggtgcttgg 6500653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 11969209 - 11969168
Alignment:
Q  130 tttgttccaccattgccggaagattattttggaaatgctgtt 171  Q
    |||||| ||||||| ||||| |||||||||||||||||||||    
T  11969209 tttgtttcaccattaccggaggattattttggaaatgctgtt 11969168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 7615546 - 7615418
Alignment:
Q  111 gataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttg 210  Q
    |||||||||| ||| |||||| ||||||||||| || ||| ||||||||||||||||  || ||  || |||||||  ||||||||||||||||||| ||    
T  7615546 gataggagttcgaccaaggttagttccaccattaccagaatattattttggaaatgcacttataagttgtatggttaaaatgaaagttggggagttggtg 7615447  T
Q  211 gaagaaggcgggcttggtaaatgtgcttg 239  Q
    |||||||| || ||| ||||| |||||||    
T  7615446 gaagaaggtggactttgtaaaggtgcttg 7615418  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 7655961 - 7656087
Alignment:
Q  112 ataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttgg 211  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||||| ||  || ||| ||    | ||  |||||||||||||||||||||||    
T  7655961 ataggagttagaccaagacttgttccaccattgccggaagattattttggaaacgcgattataggttgcgggtttaaaatgaaagttggggagttgttgg 7656060  T
Q  212 aagaaggcgggcttggtaaatgtgctt 238  Q
    | ||||| ||| |||||||| ||||||    
T  7656061 aggaaggtgggattggtaaaggtgctt 7656087  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 7628922 - 7628789
Alignment:
Q  106 gtcgggataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagt 205  Q
    |||| |||||||||||||| |||| || |||||||||| || ||||||||||||||||||||  || ||  || |||||||  |||||||| || ||| |    
T  7628922 gtcgcgataggagttagaccaaggcttattccaccattaccagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctgaggaat 7628823  T
Q  206 tgttggaagaaggcgggcttggtaaatgtgcttg 239  Q
    ||||||| ||||| || ||| ||||| |||||||    
T  7628822 tgttggaggaaggtggactttgtaaaggtgcttg 7628789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 7637368 - 7637236
Alignment:
Q  106 gtcgggataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagt 205  Q
    |||| |||||||||| ||| |||||| |||||||| || || ||||||||||||||||||||  || ||  || |||||||  |||||||| |||||| |    
T  7637368 gtcgtgataggagttcgaccaaggttagttccaccgttaccagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctggggaat 7637269  T
Q  206 tgttggaagaaggcgggcttggtaaatgtgctt 238  Q
    ||||||| ||||| || ||| ||||| ||||||    
T  7637268 tgttggaggaaggtggactttgtaaaggtgctt 7637236  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 7606537 - 7606479
Alignment:
Q  106 gtcgggataggagttagacaaaggtttgttccaccattgccggaagattattttggaaa 164  Q
    |||| |||||||||| ||| |||||||||||||||||| || |||||||||||||||||    
T  7606537 gtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttggaaa 7606479  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 8910985 - 8911092
Alignment:
Q  111 gataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttg 210  Q
    |||||||||| ||| |||||| ||||||||||| || ||| ||||||||||||||||  |||||  || |||||||  |||||||||||||||| |||||    
T  8910985 gataggagttggaccaaggttagttccaccattaccagaatattattttggaaatgcaattgtaagttgtatggttaaaatgaaagttggggagctgttg 8911084  T
Q  211 gaagaagg 218  Q
    || |||||    
T  8911085 gaggaagg 8911092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 239
Target Start/End: Original strand, 8935924 - 8936052
Alignment:
Q  111 gataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttg 210  Q
    |||||||||| ||| |||||| ||||||||||| || ||| |||||||||||||||| ||| ||  || |||||||  ||||| || |||||||||||||    
T  8935924 gataggagttggaccaaggttagttccaccattaccagaatattattttggaaatgcagttataagttgtatggttaaaatgacagctggggagttgttg 8936023  T
Q  211 gaagaaggcgggcttggtaaatgtgcttg 239  Q
     | ||||| || ||| ||||| |||||||    
T  8936024 aaggaaggtggactttgtaaaggtgcttg 8936052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 8938715 - 8938753
Alignment:
Q  126 aaggtttgttccaccattgccggaagattattttggaaa 164  Q
    |||||||||||||||||| || |||||||||||||||||    
T  8938715 aaggtttgttccaccattaccagaagattattttggaaa 8938753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 15196011 - 15196091
Alignment:
Q  151 gattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttggaagaaggcgggcttggtaaa 231  Q
    |||||||||||||||||| |  ||| || |  |||| ||||||||||  ||||| | || |||||||||||||||||||||    
T  15196011 gattattttggaaatgctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggcgggcttggtaaa 15196091  T

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