View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_high_13 (Length: 404)
Name: NF19001_high_13
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 1607515 - 1607896
Alignment:
| Q |
18 |
atatattcatataaaa-gtacataagcgatagtgttatgacatcaatattatcatatgaatcaaatgtaaatctggagattacaaaattttaacannnnn |
116 |
Q |
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| T |
1607515 |
atatattcatataaaaagtacataagcgatagtgttatgacatcaatattatcatatgaatcaaatttaaatctggagattacaaaattttaacattttt |
1607614 |
T |
|
| Q |
117 |
nn-aggaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcat |
215 |
Q |
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| T |
1607615 |
tttaagaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacaaattataattgctctttgtgtcttgttattttaaaattcat |
1607714 |
T |
|
| Q |
216 |
ttttatcttcccattttcaaccctatcatatttatattactctatgtatgtcacaaaataaacattcaataatttatcttacatttaattcttcatgaat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||| |
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| T |
1607715 |
ttttatcttcccattttcaaccctatcatatttatattactctatgtatgtcacaaaataaacattccataatttatctttcatttaattcttcctaaat |
1607814 |
T |
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| Q |
316 |
aaagttattgaataaccttttagcagtacaatacttaaattttaaatagaaaaatataaaatcattgttagtacctttgcta |
397 |
Q |
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| T |
1607815 |
aaagttattgaataactttttagcagcacaatacttaaattttaaatagaaaaatataaaatcattgttagtacctttgcta |
1607896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 1630509 - 1630852
Alignment:
| Q |
18 |
atatattcatataaaagtacataagcgatagtgttatgacatcaatattatcatatgaatcaaatgtaaatctggagattacaaaattttaacannnnnn |
117 |
Q |
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| T |
1630509 |
atatattcatataaaagtacataagcgatagtgctatgacttcaatattattatatgaatcaaatgtaaatctggagattacaaaattttaacatttttt |
1630608 |
T |
|
| Q |
118 |
n-aggaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630609 |
ttaggaaaaaattaaaacattatatacctaaaatattgaatatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatt |
1630708 |
T |
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| Q |
217 |
tttatcttcccattttcaaccctatcatatttatattactctatgtatgtcacaaaataaacattcaataatttatcttacatttaattcttcatgaata |
316 |
Q |
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| T |
1630709 |
tttatcttcccattttcaaccctatcatatttatattactctatgtatgtcacaaaataaacactcaataatttatctttcatttaattcttcctgaata |
1630808 |
T |
|
| Q |
317 |
aagttattgaataaccttttagcagtacaatacttaaattttaa |
360 |
Q |
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| T |
1630809 |
aagttattgaataaccttttagcagtacaatacttaaattttaa |
1630852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 26 - 394
Target Start/End: Original strand, 1624534 - 1624900
Alignment:
| Q |
26 |
atataaaagtacataagcgatagtgttatgacatcaatattatcatatgaatcaaatgtaaatctggagattacaaaattttaacannnnnnn-aggaaa |
124 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | |||| |
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| T |
1624534 |
atataaaagtacataagccatagtgttatgacatcaatattatcatatgaattaaatttaaatctggagattacaaaattttaacattttttttaagaaa |
1624633 |
T |
|
| Q |
125 |
aaattaaaacattatatacctaaaatattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatttttatctt |
224 |
Q |
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| T |
1624634 |
aaattaaaacattatatacctaaaatattgaagatacttgaacatctacaaattataattgctct--gtgtcttcttattttaaaattcatttttatata |
1624731 |
T |
|
| Q |
225 |
cccattttcaaccctatcatatttatattactctatgtatgtcacaaaataaacattcaataatttatcttacatttaattcttcatgaataaagttatt |
324 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||| |
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| T |
1624732 |
cccatttttaaccctatcatatttatattactctatgtatgtcacaaaataaacattcaataatttatctttcatttaattcttcctaaataaagttatt |
1624831 |
T |
|
| Q |
325 |
gaataaccttttagcagtacaatacttaaattttaaatagaaaaatataaaatcattgttagtacctttg |
394 |
Q |
| |
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|||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
1624832 |
gaataattttttagcagtacaatactt-aattttaaatagaaaaaaataaaatcattgttaatacctttg |
1624900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 121 - 235
Target Start/End: Complemental strand, 10819635 - 10819521
Alignment:
| Q |
121 |
gaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcattttta |
220 |
Q |
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|||||||||||||| |||||||||||||| |||||||| |||| | |||||||| |||||||||| ||||||||||||| ||||||||||||| |||||| |
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| T |
10819635 |
gaaaaaattaaaactttatatacctaaaaaattgaagaaacttcatcatctacaaattataattgttctttgtgtcttcatattttaaaattctttttta |
10819536 |
T |
|
| Q |
221 |
tcttcccattttcaa |
235 |
Q |
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|||||| ||||||| |
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| T |
10819535 |
gcttcccgttttcaa |
10819521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 397
Target Start/End: Original strand, 1631340 - 1631386
Alignment:
| Q |
351 |
taaattttaaatagaaaaatataaaatcattgttagtacctttgcta |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1631340 |
taaattttaaatagaaaaatataaaatcattgttagtacctttgcta |
1631386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 1602996 - 1603086
Alignment:
| Q |
128 |
ttaaaacattatatacctaaaatattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatttttatc |
222 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| | ||| |||| ||||||||||| ||||||||| |||||||||||| |||||||| |
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| T |
1602996 |
ttaaaacattatatacctaaaaaattgaagatacttcatcatatacaaattataattgc----tgtgtcttcatattttaaaattattttttatc |
1603086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 10819765 - 10819711
Alignment:
| Q |
18 |
atatattcatataaaa-gtacataagcgatagtgttatgacatcaatattatcat |
71 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10819765 |
atatatttatataaaaagtacataagcgatagtgttatgacatcaatattatcat |
10819711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 391
Target Start/End: Complemental strand, 10819219 - 10819162
Alignment:
| Q |
333 |
ttttagcagtacaatacttaaattttaaatagaaaaatataaaatcattgttagtacct |
391 |
Q |
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|||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
10819219 |
ttttagcactacaatacttac-ttttaaatagaaaaaaataaaatcattgttagtacct |
10819162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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