View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19001_high_16 (Length: 360)

Name: NF19001_high_16
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19001_high_16
NF19001_high_16
[»] chr8 (3 HSPs)
chr8 (60-210)||(43618453-43618603)
chr8 (281-360)||(43618613-43618692)
chr8 (20-58)||(18028621-18028659)
[»] chr2 (2 HSPs)
chr2 (56-218)||(275016-275178)
chr2 (20-60)||(37246412-37246452)
[»] chr3 (6 HSPs)
chr3 (224-344)||(5565152-5565280)
chr3 (20-59)||(49822130-49822169)
chr3 (218-274)||(14175269-14175325)
chr3 (20-58)||(25449767-25449805)
chr3 (20-56)||(37409763-37409799)
chr3 (20-54)||(33752063-33752097)
[»] chr7 (3 HSPs)
chr7 (281-317)||(7854246-7854282)
chr7 (20-56)||(22733548-22733584)
chr7 (31-60)||(25217617-25217646)
[»] chr5 (2 HSPs)
chr5 (20-58)||(8175645-8175683)
chr5 (20-56)||(41264188-41264224)
[»] chr4 (3 HSPs)
chr4 (20-58)||(10090513-10090551)
chr4 (20-59)||(12159500-12159539)
chr4 (20-60)||(27141483-27141523)
[»] scaffold0007 (1 HSPs)
scaffold0007 (224-274)||(257685-257735)
[»] chr6 (1 HSPs)
chr6 (20-60)||(2504103-2504143)
[»] chr1 (1 HSPs)
chr1 (20-56)||(17786997-17787033)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 60 - 210
Target Start/End: Original strand, 43618453 - 43618603
Alignment:
Q  60 atagagactgtccaagctgcataacttcctgattgagggcagccatggcatctttaatagtttgggtcaaaccaccagaaatagcatctttaagctcttc 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  43618453 atagagactgtccaagctgcataacttcctgattgagggcagccatggcatctttaatagtttggttcgaaccaccagaaatagcatctttaagctcttc 43618552  T
Q  160 cagctttgcttccaccttctctttcacagggctgggtaccttttctcgtag 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43618553 cagctttgcttccaccttctctttcacagggctgggtaccttttctcgtag 43618603  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 281 - 360
Target Start/End: Original strand, 43618613 - 43618692
Alignment:
Q  281 agatgaagacgatgatgcttttactttagtgggagaaggctaaaaaatgaacgaaatgagggcataagaagaagggtttt 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  43618613 agatgaagacgatgatgcttttactttagtgggagaaggctaaaaaatgaagcaaatgagggcataagaagaagggtttt 43618692  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 18028659 - 18028621
Alignment:
Q  20 ttgaatggcatattaaacacaccattggacatggtctta 58  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  18028659 ttgaatggcagattaaacacaccattggacatggtctta 18028621  T

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Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 275178 - 275016
Alignment:
Q  56 ttatatagagactgtccaagctgcataacttcctgattgagggcagccatggcatctttaatagtttgggtcaaaccaccagaaatagcatctttaagct 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||    
T  275178 ttatatagagactgtccaagctgcataacttcctgattgagggcagccatggcatctttcatagtttgggttgaaccaccagaaatagcatctttaagct 275079  T
Q  156 cttccagctttgcttccaccttctctttcacagggctgggtaccttttctcgtagctctttca 218  Q
    || ||| ||||||||| ||||| |||||||||||||  ||||||||||||| |||||||||||    
T  275078 ctaccaactttgcttcaaccttttctttcacagggccaggtaccttttctcctagctctttca 275016  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 37246412 - 37246452
Alignment:
Q  20 ttgaatggcatattaaacacaccattggacatggtcttata 60  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  37246412 ttgaatggcacattaaacacaccattggacatggtcttata 37246452  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 344
Target Start/End: Complemental strand, 5565280 - 5565152
Alignment:
Q  224 tggtcaacgacggtggtgcaactccggcgtggtggaaagcaagtgggtttttgtaga--------agatgaagacgatgatgcttttactttagtgggag 315  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||        |||| ||||| ||||||||||||||||||||||||    
T  5565280 tggtcaacgacggtggtgcaactccggcgtggtggaaaacaagtggg-ttttgtagaggacgaagagattaagactatgatgcttttactttagtgggag 5565182  T
Q  316 aaggct-aaaaaatgaacgaaatgagggca 344  Q
    |||||| ||||||||| |||||| ||||||    
T  5565181 aaggctgaaaaaatgatcgaaataagggca 5565152  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 49822169 - 49822130
Alignment:
Q  20 ttgaatggcatattaaacacaccattggacatggtcttat 59  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  49822169 ttgaatggcatattaaacacaccattggacatggtcttat 49822130  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 14175269 - 14175325
Alignment:
Q  218 acgcgatggtcaacgacggtggtgcaactccggcgtggtggaaagcaagtgggtttt 274  Q
    ||||| ||||||||| |  ||||||||||||||||||||||||||||| ||||||||    
T  14175269 acgcggtggtcaacgtcaatggtgcaactccggcgtggtggaaagcaaatgggtttt 14175325  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 25449805 - 25449767
Alignment:
Q  20 ttgaatggcatattaaacacaccattggacatggtctta 58  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  25449805 ttgaatggcagattaaacacaccattggacatggtctta 25449767  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 37409799 - 37409763
Alignment:
Q  20 ttgaatggcatattaaacacaccattggacatggtct 56  Q
    |||||||||| ||||||||||||||||||||||||||    
T  37409799 ttgaatggcacattaaacacaccattggacatggtct 37409763  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 33752063 - 33752097
Alignment:
Q  20 ttgaatggcatattaaacacaccattggacatggt 54  Q
    |||||||||| ||||||||||||||||||||||||    
T  33752063 ttgaatggcacattaaacacaccattggacatggt 33752097  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 7854282 - 7854246
Alignment:
Q  281 agatgaagacgatgatgcttttactttagtgggagaa 317  Q
    |||||||||||||||||||||||||||||||||||||    
T  7854282 agatgaagacgatgatgcttttactttagtgggagaa 7854246  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 22733584 - 22733548
Alignment:
Q  20 ttgaatggcatattaaacacaccattggacatggtct 56  Q
    |||||||||| ||||||||||||||||||||||||||    
T  22733584 ttgaatggcacattaaacacaccattggacatggtct 22733548  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 25217646 - 25217617
Alignment:
Q  31 attaaacacaccattggacatggtcttata 60  Q
    ||||||||||||||||||||||||||||||    
T  25217646 attaaacacaccattggacatggtcttata 25217617  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 8175683 - 8175645
Alignment:
Q  20 ttgaatggcatattaaacacaccattggacatggtctta 58  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  8175683 ttgaatggcacattaaacacaccattggacatggtctta 8175645  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 41264188 - 41264224
Alignment:
Q  20 ttgaatggcatattaaacacaccattggacatggtct 56  Q
    ||||||||||||||||||||||||||| |||||||||    
T  41264188 ttgaatggcatattaaacacaccattgaacatggtct 41264224  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 10090513 - 10090551
Alignment:
Q  20 ttgaatggcatattaaacacaccattggacatggtctta 58  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  10090513 ttgaatggcacattaaacacaccattggacatggtctta 10090551  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 12159500 - 12159539
Alignment:
Q  20 ttgaatggcatattaaacacaccattggacatggtcttat 59  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  12159500 ttgaatggcccattaaacacaccattggacatggtcttat 12159539  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 27141523 - 27141483
Alignment:
Q  20 ttgaatggcatattaaacacaccattggacatggtcttata 60  Q
    |||||||||| |||||||||||||||| | |||||||||||    
T  27141523 ttgaatggcacattaaacacaccattgtaaatggtcttata 27141483  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 257735 - 257685
Alignment:
Q  224 tggtcaacgacggtggtgcaactccggcgtggtggaaagcaagtgggtttt 274  Q
    ||||||||||| |||||  ||||||||||||| ||||||||| ||||||||    
T  257735 tggtcaacgacagtggtttaactccggcgtggaggaaagcaaatgggtttt 257685  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 2504103 - 2504143
Alignment:
Q  20 ttgaatggcatattaaacacaccattggacatggtcttata 60  Q
    |||||||||| |||||||||||||||| | |||||||||||    
T  2504103 ttgaatggcacattaaacacaccattgtaaatggtcttata 2504143  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 17786997 - 17787033
Alignment:
Q  20 ttgaatggcatattaaacacaccattggacatggtct 56  Q
    ||||||| || ||||||||||||||||||||||||||    
T  17786997 ttgaatgacacattaaacacaccattggacatggtct 17787033  T

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