View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19001_high_17 (Length: 359)
Name: NF19001_high_17
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 8957824 - 8958169
Alignment:
| Q |
1 |
caaatgttacaaacatatacttttcagaaaatagttttgcatccatcattgttgatccaatcaatggagaagtagtcaaagcttacatcaagagttataa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8957824 |
caaatgttacaaacatatacttttcagaaaatagttttgcatccatcattgttgatccaatcaatggagaagtagtcaaagcttacatcaagagttataa |
8957923 |
T |
|
| Q |
101 |
ctctaaaaactctacttcaaaagcaagcatgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggcct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8957924 |
ctctaaaaactctacttcaaaagcaagcatgtctttcatgaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggcct |
8958023 |
T |
|
| Q |
201 |
tcaaatagttgtccatatattttgaaacctgacatcactgctcctggtacaaatatcttagctgcatggcccacaaatgttcctgtgatgggtttgggga |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8958024 |
tcaaatagttgtccatatattttgaaacctgacatcactgctcctggtacaaatatcttagctgcatggcccacaaatgttcctgtgatgggtttgggga |
8958123 |
T |
|
| Q |
301 |
ctcataagatcttcaacaagttcaatgtgataagtggaacatctat |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8958124 |
ctcataagatcttcaacaagttcaatgtgataagtggaacatctat |
8958169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 115 - 287
Target Start/End: Complemental strand, 8946129 - 8945957
Alignment:
| Q |
115 |
cttcaaaagcaagcatgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtcc |
214 |
Q |
| |
|
|||||| ||||| |||||||||||| | || ||||||||| ||||||||||||| |||||| |||| |||||| ||||| || |||||||||||||| |
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| T |
8946129 |
cttcaatagcaaatatgtctttcaagttatcaatttttggaactaaaccagcacctggtgtttactcttctagttcgagaggaccatcaaatagttgtcc |
8946030 |
T |
|
| Q |
215 |
atatattttgaaacctgacatcactgctcctggtacaaatatcttagctgcatggcccacaaatgttcctgtg |
287 |
Q |
| |
|
|||| | |||||||||||||| || ||||||| |||| ||||||||||||||||||||||| |||||||| |
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|
| T |
8946029 |
atatgtcttgaaacctgacattacggctcctgatacatcaatcttagctgcatggcccacaaaacttcctgtg |
8945957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 108 - 346
Target Start/End: Original strand, 8962945 - 8963183
Alignment:
| Q |
108 |
aactctacttcaaaagcaagcatgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaata |
207 |
Q |
| |
|
||||||| ||||| || || ||||||||||||| ||| |||||| |||||||| |||||| || || ||||||||| |||||||| ||||| | |
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| T |
8962945 |
aactctagttcaatagaaaaaatgtctttcaagattacatcttttggtgctaaaccagtacctagggtggatttttatagttctagagggccatcaaaga |
8963044 |
T |
|
| Q |
208 |
gttgtccatatattttgaaacctgacatcactgctcctggtacaaatatcttagctgcatggcccacaaatgttcctgtgatgggtttggggactcataa |
307 |
Q |
| |
|
||||||||||| | |||||||||||||| || ||||| ||||| ||||||||||||||||| |||||||||||||| ||| ||| ||| ||||||| |
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|
| T |
8963045 |
gttgtccatatgtgttgaaacctgacattacagctcccggtacgtcaatcttagctgcatggcctccaaatgttcctgtgttggattttgggtctcataa |
8963144 |
T |
|
| Q |
308 |
gatcttcaacaagttcaatgtgataagtggaacatctat |
346 |
Q |
| |
|
|| |||||||||||||| | ||| |||||||||||| |
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|
| T |
8963145 |
agtcgtcaacaagttcaattttttaactggaacatctat |
8963183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 132 - 346
Target Start/End: Original strand, 8974365 - 8974579
Alignment:
| Q |
132 |
tctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtccatatattttgaaacctg |
231 |
Q |
| |
|
|||||||||| |||| |||||| ||||||||| ||||| || || ||||||||||||||| ||||| | ||||| ||| || |||||||||||| |
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|
| T |
8974365 |
tctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttcaagaggtccttctgaaagttgcccaaatgttttgaaacctg |
8974464 |
T |
|
| Q |
232 |
acatcactgctcctggtacaaatatcttagctgcatggcccacaaatgttcctgtgatgggtttggggactcataagatcttcaacaagttcaatgtgat |
331 |
Q |
| |
|
|||| || | |||||||||| ||||||||||||||||| |||||| |||||||| ||| || ||| | | ||| ||||||||||||||||| | | |
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|
| T |
8974465 |
acattacaggtcctggtacatcaatcttagctgcatggcctacaaatattcctgtgttggagtttgggtcacgtaaagtcttcaacaagttcaatttttt |
8974564 |
T |
|
| Q |
332 |
aagtggaacatctat |
346 |
Q |
| |
|
||||||||||||||| |
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|
| T |
8974565 |
aagtggaacatctat |
8974579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 34963005 - 34962681
Alignment:
| Q |
13 |
acatatacttttcagaaaatagttttgcatccatcattgttgatccaatcaatggagaagtagtcaaagcttacatcaagagttataactctaaaaactc |
112 |
Q |
| |
|
|||||| || |||| |||||||||||||| ||||| ||||| ||||||| ||||| ||| | ||||||||||||||||||||| |||||||| |
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|
| T |
34963005 |
acatattctattcacaaaatagttttgcaaccatccttgttaatccaataaatggtgaaattgtcaaagcttacatcaagagtagtaactcta------- |
34962913 |
T |
|
| Q |
113 |
tacttcaaaagcaagcatgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgt |
212 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| ||| |||||||| |
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|
| T |
34962912 |
--cttcaattgcaagcatgtctttcatgaaaacagtttttggaactaaaccagcacctagtgttgattcatatagttcaagagggccatcatatagttgt |
34962815 |
T |
|
| Q |
213 |
ccatatattttgaaacctgacatcactgctcctggtacaaatatcttagctgcatggcccacaaatgttcctgtgatgggtttggggactcataagatct |
312 |
Q |
| |
|
|||| | | |||||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||||| || | | ||||||| || | |
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|
| T |
34962814 |
ccatttgtgttgaaacctgacattactgcgcctggtacttcgatcttagcggcatggcctacaaatgttcctgtgatggaatttgagtctcataaaattt |
34962715 |
T |
|
| Q |
313 |
tcaacaagttcaatgtgataagtggaacatctat |
346 |
Q |
| |
|
||| ||| |||||| ||||||||||||||||||| |
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|
| T |
34962714 |
tcagcaaattcaatttgataagtggaacatctat |
34962681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 123 - 346
Target Start/End: Complemental strand, 19375998 - 19375775
Alignment:
| Q |
123 |
gcaagcatgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtccatatattt |
222 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||| |||||||| | | | |
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|
| T |
19375998 |
gcaagcatgtctttcaagaaaacaatttttggtgttaaaccaacacctagtgttgatctttatagttcaagagggccttcaaataattgtccatttgtgt |
19375899 |
T |
|
| Q |
223 |
tgaaacctgacatcactgctcctggtacaaatatcttagctgcatggcccacaaatgttcctgtgatgggtttggggactcataagatcttcaacaagtt |
322 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||||||||||||||||| |||||||||| |||| ||| |||||||||| ||| ||||||||||||| |
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|
| T |
19375898 |
tgaaacccgacatcactgctcttggtacatcaatcttagctgcatggccaacaaatgttcatgtgttggatttggggacttttaaagtcttcaacaagtt |
19375799 |
T |
|
| Q |
323 |
caatgtgataagtggaacatctat |
346 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
19375798 |
caatttgataagtggaacatctat |
19375775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 30 - 287
Target Start/End: Complemental strand, 21687374 - 21687120
Alignment:
| Q |
30 |
aatagttttgcatccatcattgttgatccaatcaatggagaagtagtcaaagcttacatcaagagttataactctaaaaactctacttcaaaagcaagca |
129 |
Q |
| |
|
|||||||| ||||||||||| || ||||| | ||||||||| | || |||||||||||||||||| |||||||||| | ||| ||||| ||||| || |
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|
| T |
21687374 |
aatagtttcccatccatcattattaatccagtaaatggagaaattgtgaaagcttacatcaagagtcataactctaa---cgctagttcaatagcaaaca |
21687278 |
T |
|
| Q |
130 |
tgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtccatatattttgaaacc |
229 |
Q |
| |
|
|||||||||||||||||| ||| || ||||| || |||||||||| || |||||| ||||| || || |||||||||||||||||| | |||||||| |
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|
| T |
21687277 |
tgtctttcaagaaaacagctttcggtgttaaatcaacacctagtgtggatttttatagctcaaggggaccatcaaatagttgtccatatgtgttgaaacc |
21687178 |
T |
|
| Q |
230 |
tgacatcactgctcctggtacaaatatcttagctgcatggcccacaaatgttcctgtg |
287 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
21687177 |
tgacatcactgctcctggtacatcaatcttagctgcatggcccacaaacgttcctgtg |
21687120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 49008161 - 49008250
Alignment:
| Q |
182 |
ttatagttcaagagggccttcaaatagttgtccatatattttgaaacctgacatcactgctcctggtacaaatatcttagctgcatggcc |
271 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||||| | | |||||||| |||||||| || || || ||| ||||||||| ||||||| |
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|
| T |
49008161 |
ttatagctcaagagggccatcacatagttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcc |
49008250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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