View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19001_high_22 (Length: 338)
Name: NF19001_high_22
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 5568888 - 5569201
Alignment:
| Q |
17 |
agtaacattggtgaagtacattgagaatatgtgctaatgggattgggattacacaggagcaggtccagttcccatcatgactatttaattaatcttttat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5568888 |
agtaacattggtgaagtacattgagaatatgtgctaatgggactgggattacacaggagcaggtccagttcccatcatgactatttaattaatcttttat |
5568987 |
T |
|
| Q |
117 |
gctttttaatgaacccaagtgagctaaatctatggttgggg-ggctgggattccactggacccttcggtgattggagaggatccgtgcctgtgctaatgt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5568988 |
gctttttaatgaacccaagtgagctaaatctatggttgggggggctgggattccactggacccttcggtgattggagaggatccgtgcctgtgctaatgt |
5569087 |
T |
|
| Q |
216 |
tatttgtcacttaggtccttgataacatgtataagaatatggtgaagaaatggtaccacatatgcagctgatgtgtcaaaaaatgtgacacatcatcaca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5569088 |
tatttgtcacttaggtccttgataacatgtataagaatatggtgaataaatggtaccacatatgcagctgatttgtcaaaaaatgtgacacatcatcaca |
5569187 |
T |
|
| Q |
316 |
actagtagaataat |
329 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5569188 |
actagtagaataat |
5569201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 11440677 - 11440587
Alignment:
| Q |
66 |
tacacaggagcaggtccagttcccatcatgactatttaattaatcttttatgctttttaatgaacccaagtgagctaaatctatggttggg |
156 |
Q |
| |
|
|||||||||| | |||||||| | |||||||| ||| ||||| ||||||||||| |||||||||| || || || ||||| ||||||||| |
|
|
| T |
11440677 |
tacacaggaggaagtccagtttcaatcatgaccattcaattagtcttttatgctctttaatgaactcaggtcagtcaaatcaatggttggg |
11440587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 26635509 - 26635433
Alignment:
| Q |
80 |
tccagttcccatcatgactatttaattaatcttttatgctttttaatgaacccaagtgagctaaatctatggttggg |
156 |
Q |
| |
|
||||||| | |||||||| ||| |||| ||||||||||||||||||||||||| || ||| ||||| ||||||||| |
|
|
| T |
26635509 |
tccagtttcaatcatgaccattcaattggtcttttatgctttttaatgaacccaggtcagccaaatcaatggttggg |
26635433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 43027173 - 43027211
Alignment:
| Q |
161 |
tgggattccactggacccttcggtgattggagaggatcc |
199 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
43027173 |
tgggattccactggaccctccagtgattggagaggatcc |
43027211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University