View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19001_high_24 (Length: 327)
Name: NF19001_high_24
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_high_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 310
Target Start/End: Original strand, 11365999 - 11366294
Alignment:
| Q |
15 |
tatgtaatattccactgatttcaaataagttaattatttcttcctttgttttgtagggaagtaatgataaatttcttgaccttaacttttttatttcaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11365999 |
tatgtaatattccactgatttcaaataagttaattatttcttcctttgttttgtagggaagtaatgataaatttcttgagcttaacttttttatttcaaa |
11366098 |
T |
|
| Q |
115 |
aatatttttggaattaaatgaatggattttccttaattcattgttggagaagtgtctagaatttgttgaaagcgcattacttggaaaggtttgattgata |
214 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11366099 |
aatatttttggaattaaaggaatggattttccttaattcattgttggagaagtgtctagaatttgttgaaagcgcattacttggaaaggtttgattgata |
11366198 |
T |
|
| Q |
215 |
cacgtctaaatcttttcaagttttatatttgaaaagcaatggacaaacatctgattttgactagtattttaaaatgcagttctgccaggtttctga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11366199 |
cacgtctaaatcttttcaagttttatatttgaaaagcaatggacaaacatctgattttgacttgtattttaaaatgcagttctgccaggtttctga |
11366294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University