View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_high_25 (Length: 317)
Name: NF19001_high_25
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 43065734 - 43065431
Alignment:
| Q |
1 |
aatatacagaatccaagccaaataattgaataccaaacaaacaagtatgtaataataacaactnnnnnnnnnncattacgataatataataatggcatgg |
100 |
Q |
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| T |
43065734 |
aatatacagaatccaagccaaataattgaataccaaacaaacaagtatgtaataataacaactaaaaaaaa--cattacgataatataataatggcatgg |
43065637 |
T |
|
| Q |
101 |
taatgttaaaatgcaagaatgaagtatatatgagaacacagaaccatcgactattttaaaactagcgattcataaatnnnnnnncgataggattcagaat |
200 |
Q |
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| T |
43065636 |
taatgttaaaatgcaagaatgaagtatatatgagaacacagaaccatcaactattttaaaactagcgattcataaataaaaaaacgataggattcagaat |
43065537 |
T |
|
| Q |
201 |
tgcgattaaacacgtgcatgaatagaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcgat |
300 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43065536 |
tgcgattaaacatgtgcatgaatcgaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcgat |
43065437 |
T |
|
| Q |
301 |
gatgat |
306 |
Q |
| |
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|||||| |
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| T |
43065436 |
gatgat |
43065431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 225 - 305
Target Start/End: Original strand, 43047402 - 43047482
Alignment:
| Q |
225 |
gaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcgatgatga |
305 |
Q |
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| T |
43047402 |
gaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaattgattatga |
43047482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 43047239 - 43047289
Alignment:
| Q |
84 |
atataataatggcatggtaatgttaaaatgcaagaatgaagtatatatgag |
134 |
Q |
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| T |
43047239 |
atataataatggcatggtaatgttaaaatgcatgaatgaagaatgtatgag |
43047289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 42159055 - 42159107
Alignment:
| Q |
230 |
acaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaata |
282 |
Q |
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||||||||||||| |||||||| ||| |||||||||||||| ||||||||| |
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| T |
42159055 |
acaaaagcattattatgtaatcgatcaaagatgtaaagtaaagtacacgaata |
42159107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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