View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_high_33 (Length: 270)
Name: NF19001_high_33
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 44968865 - 44968612
Alignment:
| Q |
1 |
acaatactccaacataagaaagacaatgtactaaatcaaatatgttttcttagttacgaaattatcaagacacgtgcatttgtgacgcgtgtaatannnn |
100 |
Q |
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| T |
44968865 |
acaatactccaacataagaaagacaatgtactaaatcaa-tatgttttcttagttacgaaattatcaagacacatgcatttgtgacgcgtgtaatatatt |
44968767 |
T |
|
| Q |
101 |
nnnnatcgtttactgctttgagaaaatttatccaacaaacaagaagatgcaatgaaccactactattaaaagcatagattcaatttccaatcttaatgtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44968766 |
ttttatcgtttactgctttgagaaaatttatccaacaaacaagaagatgcaatgaactactactactaaaagcatagattcaatttccaatcttaatgtc |
44968667 |
T |
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| Q |
201 |
tcgttagaatatgaatatcccaaacaagaaaacaaatataggaaatggatccaat |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44968666 |
tcgttagaatatgaatatcccaaacaagaaaacaaatataggaaatggatccaat |
44968612 |
T |
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