View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_high_35 (Length: 265)
Name: NF19001_high_35
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_high_35 |
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| [»] scaffold0059 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 59 - 242
Target Start/End: Complemental strand, 1954996 - 1954813
Alignment:
| Q |
59 |
tagtgccaccgtatgcagcaccccctccaaagtaaattgttatgtccctaggccacatgcgagaccgcagaaactggtcaggagttagcgaaaccaagag |
158 |
Q |
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| T |
1954996 |
tagtgccaccgtatgtaccaccccctccagagtaaattgttctgtccctaggccacatgcaagactgcagaaattggtcaggagttagcgaaaccaagag |
1954897 |
T |
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| Q |
159 |
agcatcatagatatgatggtagattctctagttactgcggaaaattgcagcatgttgatccatcatgaggtagtccctctgctc |
242 |
Q |
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| T |
1954896 |
agcatcatagatatgatggtagattctctggttactgcggaaaattgcagcatgttgatccatcatgaggtagtccctctgctc |
1954813 |
T |
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Target: scaffold0059 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 248
Target Start/End: Original strand, 15268 - 15358
Alignment:
| Q |
158 |
gagcatcatagatatgatggtagattctctagttactgcggaaaattgcagcatgttgatccatcatgaggtagtccctctgctcctgtct |
248 |
Q |
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| T |
15268 |
gagcatcatagagatgttggtagatgccctggttacttcgtaaaacggctgcatgctaatccatcatgaggtagtccctctgctcctgtct |
15358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 248
Target Start/End: Original strand, 14021 - 14111
Alignment:
| Q |
158 |
gagcatcatagatatgatggtagattctctagttactgcggaaaattgcagcatgttgatccatcatgaggtagtccctctgctcctgtct |
248 |
Q |
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| T |
14021 |
gagcatcatagagatgttggaagatgccttggttacttcggaaaactgccacatgttgttccatcatgagatagtccctctgctcctgtct |
14111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 15157 - 15221
Alignment:
| Q |
59 |
tagtgccaccgtatgcagcaccccctccaaagtaaattgttatgtccctaggccacatgcgagac |
123 |
Q |
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| T |
15157 |
tagtgccaccgtgtgcaccaccccctccagagtaaactggcatgtccccaggccacatgcaagac |
15221 |
T |
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