View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19001_high_43 (Length: 227)

Name: NF19001_high_43
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19001_high_43
NF19001_high_43
[»] chr8 (3 HSPs)
chr8 (20-212)||(5322890-5323081)
chr8 (19-212)||(17798499-17798691)
chr8 (140-212)||(15987851-15987923)
[»] chr6 (2 HSPs)
chr6 (38-212)||(7318264-7318438)
chr6 (19-159)||(22795480-22795620)
[»] chr3 (3 HSPs)
chr3 (61-211)||(22243517-22243667)
chr3 (30-166)||(22974797-22974933)
chr3 (20-61)||(39950949-39950990)
[»] chr2 (1 HSPs)
chr2 (19-211)||(19323106-19323297)
[»] chr4 (3 HSPs)
chr4 (93-209)||(36392301-36392417)
chr4 (135-212)||(9394169-9394246)
chr4 (19-208)||(42586475-42586664)
[»] chr1 (1 HSPs)
chr1 (19-130)||(17895361-17895473)
[»] chr5 (2 HSPs)
chr5 (150-212)||(43247402-43247464)
chr5 (150-212)||(43253867-43253929)
[»] chr7 (2 HSPs)
chr7 (135-212)||(14107565-14107642)
chr7 (135-212)||(14417522-14417599)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 5322890 - 5323081
Alignment:
Q  20 atggatcttaaatcgcttttgtgttggcagacgattcatatgccgatttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcg 119  Q
    |||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5322890 atggatcttaaatcgcttttgtgttgacagacgattcatacgcc-atttagtttctccattcattatgtttgatttggagtgtgggactcgaaatggtcg 5322988  T
Q  120 tttagcttgtttccctttgttgcagggagatgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 212  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||  |||||||||    
T  5322989 tttagcttgtttccctttgttgcagggagatgatggtacatagactcgctttcgtgtcgacgaacggtacaatcactgcactagagacctttg 5323081  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 17798499 - 17798691
Alignment:
Q  19 gatggatcttaaatcgcttttgtgttggcagacgattcatatgccgatttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtc 118  Q
    ||||||||||| |||||||||| ||| | ||||||||||||||||  ||||| ||| ||||||| |||| |||| ||||  ||||||  || ||| ||||    
T  17798499 gatggatcttagatcgcttttgcgttaggagacgattcatatgccagtttagattcgccattcactatggttgacttggtttgtggggctcaaaagggtc 17798598  T
Q  119 gtttagcttgtttccctttgttgcagggagatgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 212  Q
    ||||| |||  ||  ||||||||||||||| ||||| ||||| ||  | ||| ||||| |||| ||| |||||||||  || ||||||||||||    
T  17798599 gtttaactt-attatctttgttgcagggagttgatggtacatagatccgcttccgtgttgacgaacgatccaatcaccacattgaagacctttg 17798691  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 15987923 - 15987851
Alignment:
Q  140 tgcagggagatgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 212  Q
    ||||||||| | ||| |||||||||   ||||||||| ||||||||||||| |||| ||| ||| ||||||||    
T  15987923 tgcagggagtttatggtacatggacctgctttcgtgttgacggacggtccactcaccgcaatgatgacctttg 15987851  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 212
Target Start/End: Original strand, 7318264 - 7318438
Alignment:
Q  38 ttgtgttggcagacgattcatatgccgatttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttcccttt 137  Q
    ||||| ||| ||||||||||||  ||| |||||||| ||||||| |||||||| |||| || ||||| |||||||| |||| ||||||||| | || |||    
T  7318264 ttgtgctggtagacgattcatacaccggtttagtttatccattctttatgtttaatttagattgtggcattcgaaagggtcatttagcttgctgccattt 7318363  T
Q  138 gttgcagggagatgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 212  Q
    |  |||||||| ||||| |||||||||||  |||| ||| ||||||||  || ||||| ||| ||||||||||||    
T  7318364 ggagcagggagttgatggtacatggactcgttttcatgttgacggacgaccctatcacggcattgaagacctttg 7318438  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 22795620 - 22795480
Alignment:
Q  19 gatggatcttaaatcgcttttgtgttggcagacgattcatatgccgatttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtc 118  Q
    ||||||| || |||||||| | |||||| ||| ||||||||  |   ||| ||||||||||||| ||||||||||||  | |||| || |||||| ||||    
T  22795620 gatggattttgaatcgcttctatgttggaagatgattcatacacatgttttgtttctccattcaatatgtttgatttaaactgtgagactcgaaagggtc 22795521  T
Q  119 gtttagcttgtttccctttgttgcagggagatgatgataca 159  Q
     ||||||||| |||||||||||| |||||| ||||| ||||    
T  22795520 atttagcttgcttccctttgttgtagggagttgatggtaca 22795480  T

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Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 61 - 211
Target Start/End: Complemental strand, 22243667 - 22243517
Alignment:
Q  61 gccgatttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttccctttgttgcagggagatgatgatacat 160  Q
    |||| ||||||||||||||||| ||||| ||||||||| ||||  |||||||| | |||||||| ||| | ||||||| | || |||| ||||| |||||    
T  22243667 gccggtttagtttctccattcactatgtatgatttggactgtgaaattcgaaaggatcgtttagtttgatgccctttgctacatggagttgatggtacat 22243568  T
Q  161 ggactcactttcgtgtcgacggacggtccaatcactgcactgaagaccttt 211  Q
    |||||| | |  |||| |||||||||||||||||| ||| |||||| ||||    
T  22243567 ggactcccgtcggtgttgacggacggtccaatcaccgcattgaagatcttt 22243517  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 22974797 - 22974933
Alignment:
Q  30 aatcgcttttgtgttggcagacgattcatatgccgatttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgt 129  Q
    |||||||||| || ||| |||||||||||| || | |||||||| |||||||| |||||||||||| || |||| || |||||| ||| ||||||||||     
T  22974797 aatcgcttttatgctggaagacgattcatacgctggtttagtttgtccattcactatgtttgatttagactgtgagactcgaaagggttgtttagcttgc 22974896  T
Q  130 ttccctttgttgcagggagatgatgatacatggactc 166  Q
    | || |||| ||||||||| | ||| |||||||||||    
T  22974897 tgccttttgctgcagggagtttatggtacatggactc 22974933  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 39950990 - 39950949
Alignment:
Q  20 atggatcttaaatcgcttttgtgttggcagacgattcatatg 61  Q
    ||||||||| |||||||||||||||| |||||||||||||||    
T  39950990 atggatcttgaatcgcttttgtgttgacagacgattcatatg 39950949  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 19323297 - 19323106
Alignment:
Q  19 gatggatcttaaatcgcttttgtgttggcagacgattcatatgccgattta-gtttctccattcattatgtttgatttggagtgtgggattcgaaatggt 117  Q
    ||||||||||  |||| || |||||||||||| |||||||| ||   |||| | ||| ||||||||| | ||||||||| | | ||||  | |||| | |    
T  19323297 gatggatcttggatcgtttatgtgttggcagatgattcatacgctagtttaagattcaccattcattttatttgatttgtattatggggcttgaaaggat 19323198  T
Q  118 cgtttagcttgtttccctttgttgcagggagatgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcactgaagaccttt 211  Q
    ||||||||||||| || || |||||| |||| ||||| |||||| || ||||| ||||| ||||||||||||| |||||||| |||||||||||    
T  19323197 cgtttagcttgttgccattagttgcatggagttgatg-tacatgaac-cacttccgtgttgacggacggtccagtcactgcattgaagaccttt 19323106  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 36392417 - 36392301
Alignment:
Q  93 tttggagtgtgggattcgaaatggtcgtttagcttgtttccctttgttgcagggagatgatgatacatggactcactttcgtgtcgacggacggtccaat 192  Q
    |||||| |||| || |||||| |||||||||||||| | || |||| ||||||||| |||||  ||| |||||||||||||||  ||||||||| || ||    
T  36392417 tttggattgtgtgactcgaaagggtcgtttagcttgctgccatttgctgcagggagttgatggaacaaggactcactttcgtgctgacggacggccctat 36392318  T
Q  193 cactgcactgaagacct 209  Q
    |||  ||||||||||||    
T  36392317 caccacactgaagacct 36392301  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 9394246 - 9394169
Alignment:
Q  135 tttgttgcagggagatgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 212  Q
    |||||||||||||| ||||| ||||||||  ||||| ||||| ||||||||||||||||||  || |||| |||||||    
T  9394246 tttgttgcagggagttgatggtacatggatccacttccgtgttgacggacggtccaatcaccacaatgaacacctttg 9394169  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 42586475 - 42586664
Alignment:
Q  19 gatggatcttaaatcgcttttgtgttggcagacgattcatatgccgatttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtc 118  Q
    |||||||||| ||| |||| ||||||||||||||||||||| |   |||||| ||   |||||| ||||||||| ||  | || |||  |||||| | ||    
T  42586475 gatggatcttgaatggcttatgtgttggcagacgattcatacggtaatttagatttgtcattcactatgtttgacttaaactgcggggctcgaaaggatc 42586574  T
Q  119 gtttagcttgtttccctttgttgcagggagatgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcactgaagacc 208  Q
     |||||||||||  | |||||||||||||| | ||| |||| ||||   |||  |||| || |||||||| |||||| ||||||||||||    
T  42586575 atttagcttgttgtcatttgttgcagggagttaatggtacaaggacctgcttctgtgttgaaggacggtctaatcaccgcactgaagacc 42586664  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 17895361 - 17895473
Alignment:
Q  19 gatggatcttaaatcgcttttgtgttggcagacgattcatatgccgattta-gtttctccattcattatgtttgatttggagtgtgggattcgaaatggt 117  Q
    |||||||||| ||| | |||||| |||| |||||||||||| ||| | ||| | ||| ||||||| | ||||||||||||| |||| |  ||||||| ||    
T  17895361 gatggatcttgaattgtttttgtcttggtagacgattcatacgccaacttaagattcgccattcactttgtttgatttggattgtgaggctcgaaatagt 17895460  T
Q  118 cgtttagcttgtt 130  Q
    |||||||||||||    
T  17895461 cgtttagcttgtt 17895473  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 43247464 - 43247402
Alignment:
Q  150 tgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 212  Q
    ||||| |||||||||   ||||||||| |||||||||||||||||| ||||  ||||||||||    
T  43247464 tgatggtacatggacctgctttcgtgttgacggacggtccaatcaccgcacataagacctttg 43247402  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 43253929 - 43253867
Alignment:
Q  150 tgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 212  Q
    ||||| |||||||||   ||||||||| |||||||||||||||||| ||||  ||||||||||    
T  43253929 tgatggtacatggacctgctttcgtgttgacggacggtccaatcaccgcacataagacctttg 43253867  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 14107565 - 14107642
Alignment:
Q  135 tttgttgcagggagatgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 212  Q
    ||||| |||||||| ||||| ||||||||  | ||| ||| | |||||||||||||||||| ||| |||| |||||||    
T  14107565 tttgtagcagggagttgatggtacatggatccgcttccgtattgacggacggtccaatcaccgcaatgaacacctttg 14107642  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 14417522 - 14417599
Alignment:
Q  135 tttgttgcagggagatgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 212  Q
    ||||| |||||||| ||||| ||||||||  | ||| ||| | |||||||||||||||||| ||| |||| |||||||    
T  14417522 tttgtagcagggagttgatggtacatggatccgcttccgtattgacggacggtccaatcaccgcaatgaacacctttg 14417599  T

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