View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19001_low_1 (Length: 988)

Name: NF19001_low_1
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19001_low_1
NF19001_low_1
[»] chr4 (16 HSPs)
chr4 (18-984)||(4121397-4122377)
chr4 (84-233)||(4119067-4119217)
chr4 (562-646)||(18151792-18151876)
chr4 (649-740)||(4347133-4347224)
chr4 (18-124)||(4131920-4132026)
chr4 (649-749)||(4118662-4118762)
chr4 (649-740)||(4363559-4363650)
chr4 (657-712)||(4131534-4131589)
chr4 (394-498)||(4118839-4118943)
chr4 (397-477)||(4363438-4363518)
chr4 (512-562)||(4337985-4338035)
chr4 (902-984)||(4131274-4131359)
chr4 (298-359)||(4337668-4337729)
chr4 (511-563)||(4118763-4118815)
chr4 (519-559)||(4363514-4363554)
chr4 (330-389)||(4119009-4119071)
[»] chr3 (2 HSPs)
chr3 (562-646)||(28372514-28372598)
chr3 (562-646)||(28380336-28380420)


Alignment Details
Target: chr4 (Bit Score: 889; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 889; E-Value: 0
Query Start/End: Original strand, 18 - 984
Target Start/End: Complemental strand, 4122377 - 4121397
Alignment:
Q  18 ataaggaaaccaggatacttgattattgatcaacaaaatgaaaagtagacttaaa-cagaacttgcagatggaaatcagccatgttttcaaagaaggcat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4122377 ataaggaaaccaggatacttgattattgatcaacaaaatgaaaagtagacttaaaacagaacttgcagatggaaatcagccatgttttcaaagaaggcat 4122278  T
Q  117 tcaaaatgaaaacaatcttgcaatcacagtatgtttcaagaagagtttatctatgtggctatgtgagtctaatacatttcttcagttcacgcaatcaggt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4122277 tcaaaatgaaaacaatcttgcaatcacagtatgtttcaagaagagtttatctatgtggctatgtgagtctaatacatttcttcaattcacgcaatcaggt 4122178  T
Q  217 ttgcagtctgatctttattgttgttattcttattcaatgtgtgcctagggtttagtttttcatcggtcctcacaaaatatgtattttttggttatctaat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4122177 ttgcagtctgatctttattgttgttattcttattcaatgtgtgcctagggtttagtttttcatcggtcctcacaaaatatgtattttttagttatctaat 4122078  T
Q  317 tttttaattactgctttaaaaatgttttaacattcaatttggataccagtactcataaaagaaaggcatttctaaaataagcattttctcatttttacta 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4122077 tttttaattactgctttaaaaatgttttaacattcaatttggataccagtactcataaaagaaaggcatttctaaaataagcattttctcatttttacta 4121978  T
Q  417 tgagctcctacaatgtaggagacatgagtattgcattgagtaaataaatgccaggaaagaagaactgcagtatcatgttataatatctaagaagtaagaa 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4121977 tgagctcctacaatgtaggagacatgagtattgcattgagtaaataaatgccaggaaagaagaactgcagtatcatgttatactatctaagaagtaagaa 4121878  T
Q  517 tgaagaattattttgtttagcatgcatatttttcattggtgtgccaatattctcgaattcataagagatttctttgtctatgtatcataccatttgatct 616  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4121877 tgaagaattattttgtttagcatgcatatttttcattggtatgccaatattctcgaattcataagagatttctttgtctatgtatcataccatttgatct 4121778  T
Q  617 tttaggtcaagacatcacctcgacggttatttgatgcttgcattgagaattgtcattcttttcatttctatttttgatttgtggaatttggttttgttgg 716  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  4121777 tttaggtcaagacgtcacctcgacggttatttgatgcttgcattgagaattgtcattcttttcatttctattttagatttgtggattttggttttgttgg 4121678  T
Q  717 ctaatgtaggggatttctctttctgggggtaagctctagaactgtttgagagtttgtacccttgatgttgagcacaagagcatcctgccgactgcaaaca 816  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4121677 ctaatgtaggagatttctctttctgggggtaagctctagaactgtttgagagtttgtacccttgatgttgagcataagagcatcctgccgactgcaaaca 4121578  T
Q  817 atatttcgttaaacttcttcccgactgcagctggactatattcgtcggccacaggtttttcctttcttgataataaatt-------------tttaaaat 903  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||             ||||||||    
T  4121577 atatttcgttaaacttcttcccgactgcagctggactatattcgttggccacaggtttttcctttcttgataataaatttttatattgaatttttaaaat 4121478  T
Q  904 tttaactttgatcgttatctgcagtaaatttgtgtttttaaaacttgccaaacattgaagagaaagaatcattatccattg 984  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4121477 tttaactttgatcgttatctgcagtaaatttgtgtttttaaaacttgccaaacattgaagagaaagaatcattatccattg 4121397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 4119217 - 4119067
Alignment:
Q  84 gatggaaatcagccatgttttcaaagaaggcattcaaaatgaaaacaatcttg-caatcacagtatgtttcaagaagagtttatctatgtggctatgtga 182  Q
    ||||| ||||| ||||||||||| ||||||||||| ||||||| ||||| ||| ||||||||||||| ||||||||||||| |  |||||| ||||||||    
T  4119217 gatgggaatcaaccatgttttcagagaaggcattcgaaatgaagacaatattggcaatcacagtatgcttcaagaagagttcagatatgtgactatgtga 4119118  T
Q  183 gtctaatacatttcttcagttcacgcaatcaggtttgcagtctgatcttta 233  Q
     |||||||||||||||| |||| | || |||||||||||||||||||||||    
T  4119117 atctaatacatttcttctgttctcccagtcaggtttgcagtctgatcttta 4119067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 562 - 646
Target Start/End: Original strand, 18151792 - 18151876
Alignment:
Q  562 aatattctcgaattcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacatcacctcgacggttat 646  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18151792 aatatcctcgaattcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacgtcacctcgacggttat 18151876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 649 - 740
Target Start/End: Original strand, 4347133 - 4347224
Alignment:
Q  649 gatgcttgcattgagaattgtcattcttttcatttctatttttgatttgtggaatttggttttgttggctaatgtaggggatttctctttct 740  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||    
T  4347133 gatgctcgcattgagaattgtcattcttttcctttctatttttgatttgtggaatttggttttgctggctagtgtaggagatttctctttct 4347224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 4132026 - 4131920
Alignment:
Q  18 ataaggaaaccaggatacttgattattgatcaacaaaatgaaaagtagacttaaacagaacttgcagatggaaatcagccatgttttcaaagaaggcatt 117  Q
    ||||||||||||||||||||||| |||||||||| |||| ||  ||| |||||||||||| ||||| |||||||||||||||||||| |  ||| |||||    
T  4132026 ataaggaaaccaggatacttgatgattgatcaactaaattaattgtatacttaaacagaatttgcaaatggaaatcagccatgttttaagtgaaagcatt 4131927  T
Q  118 caaaatg 124  Q
    |||||||    
T  4131926 caaaatg 4131920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 649 - 749
Target Start/End: Complemental strand, 4118762 - 4118662
Alignment:
Q  649 gatgcttgcattgagaattgtcattcttttcatttctatttttgatttgtggaatttggttttgttggctaatgtaggggatttctctttctgggggtaa 748  Q
    |||||||||||| ||| |||||| ||||||| ||||||||||| |||| |||||||| ||||||||||  | |||||| |||||||||||||||| ||||    
T  4118762 gatgcttgcattaagatttgtcactcttttcctttctattttttatttatggaatttagttttgttgggcagtgtaggagatttctctttctgggtgtaa 4118663  T
Q  749 g 749  Q
    |    
T  4118662 g 4118662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 649 - 740
Target Start/End: Original strand, 4363559 - 4363650
Alignment:
Q  649 gatgcttgcattgagaattgtcattcttttcatttctatttttgatttgtggaatttggttttgttggctaatgtaggggatttctctttct 740  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||| |||  ||||||||||| |||||  |||||| |||||| ||||||    
T  4363559 gatgcttgcattgagaattgtcattcttttcctttctatttatgattggtgtgatttggttttgctggctggtgtaggagatttccctttct 4363650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 657 - 712
Target Start/End: Complemental strand, 4131589 - 4131534
Alignment:
Q  657 cattgagaattgtcattcttttcatttctatttttgatttgtggaatttggttttg 712  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  4131589 cattgagaattgtcattcttttcctttctatttttgattggtggaatttggttttg 4131534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 394 - 498
Target Start/End: Complemental strand, 4118943 - 4118839
Alignment:
Q  394 taagcattttctcatttttactatgagctcctacaatgtaggagacatgagtattgcattgagtaaataaatgccaggaaagaagaactgcagtatcatg 493  Q
    |||||||||||||||||| ||||| || |||| || |||||||||||| ||||   |||| ||||||||| || ||||| ||||||||||||||| |||     
T  4118943 taagcattttctcattttaactattagttcctgcagtgtaggagacatcagtaccacattaagtaaataagtggcaggatagaagaactgcagtaacata 4118844  T
Q  494 ttata 498  Q
    |||||    
T  4118843 ttata 4118839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 397 - 477
Target Start/End: Original strand, 4363438 - 4363518
Alignment:
Q  397 gcattttctcatttttactatgagctcctacaatgtaggagacatgagtattgcattgagtaaataaatgccaggaaagaa 477  Q
    |||||| |||||||| |||||||||||||   ||||||||||||  | ||||||||| |||||||||||| ||||||||||    
T  4363438 gcatttcctcattttaactatgagctcctttgatgtaggagacaacaatattgcattaagtaaataaatgtcaggaaagaa 4363518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 512 - 562
Target Start/End: Original strand, 4337985 - 4338035
Alignment:
Q  512 aagaatgaagaattattttgtttagcatgcatatttttcattggtgtgcca 562  Q
    |||||||||||||||||||||||| ||||||||||||| || |||||||||    
T  4337985 aagaatgaagaattattttgtttaacatgcatattttttatcggtgtgcca 4338035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 902 - 984
Target Start/End: Complemental strand, 4131359 - 4131274
Alignment:
Q  902 attttaactttgatcgttatctgcagtaaatttgtgtttttaaaacttgccaa---acattgaagagaaagaatcattatccattg 984  Q
    |||| |||||| ||| || |||||||||||||||  |||||||||| ||| ||   |||||||||| |||||||||||||||||||    
T  4131359 atttgaactttcatcattttctgcagtaaatttgactttttaaaacctgctaataaacattgaagaaaaagaatcattatccattg 4131274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 359
Target Start/End: Original strand, 4337668 - 4337729
Alignment:
Q  298 tattttttggttatctaattttttaattactgctttaaaaatgttttaacattcaatttgga 359  Q
    |||| ||| ||||||||||| |||| ||| |||||||||| ||||| |||||||||||||||    
T  4337668 tattgtttagttatctaattgtttagttattgctttaaaactgtttaaacattcaatttgga 4337729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 511 - 563
Target Start/End: Complemental strand, 4118815 - 4118763
Alignment:
Q  511 taagaatgaagaattattttgtttagcatgcatatttttcattggtgtgccaa 563  Q
    |||||||||| | ||||||| |||||||||||||||||| |||| ||||||||    
T  4118815 taagaatgaaaagttattttatttagcatgcatattttttattgatgtgccaa 4118763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 519 - 559
Target Start/End: Original strand, 4363514 - 4363554
Alignment:
Q  519 aagaattattttgtttagcatgcatatttttcattggtgtg 559  Q
    ||||| ||||||||||||||||||| |||||||||||||||    
T  4363514 aagaactattttgtttagcatgcatctttttcattggtgtg 4363554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 4119071 - 4119009
Alignment:
Q  330 ctttaaaaatgttttaacattcaatttggata----ccagtactcataaaagaaaggcatttct 389  Q
    |||||||||||||| | |||||||||||||||    ||||| ||||||||||||||||||||||    
T  4119071 ctttaaaaatgtttga-cattcaatttggatatataccagtgctcataaaagaaaggcatttct 4119009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 562 - 646
Target Start/End: Complemental strand, 28372598 - 28372514
Alignment:
Q  562 aatattctcgaattcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacatcacctcgacggttat 646  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28372598 aatatcctcgaattcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacgtcacctcgacggttat 28372514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 562 - 646
Target Start/End: Complemental strand, 28380420 - 28380336
Alignment:
Q  562 aatattctcgaattcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacatcacctcgacggttat 646  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28380420 aatatcctcgaattcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacgtcacctcgacggttat 28380336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University