View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_12 (Length: 408)
Name: NF19001_low_12
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 43812821 - 43813198
Alignment:
| Q |
17 |
acctgcaaggtttgtgaatgcatttgacagtgccaaagcagatgaaacaccttttcctccgcctgacatgtcctcacctaatagcagtttggcaaatctc |
116 |
Q |
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| T |
43812821 |
acctgcaaggtttgtgaatgcatttgacagtgccaaagcagatgaaacaccttttcctccgcctgacatgtcttcacctaatagcagtttggcaaatctc |
43812920 |
T |
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| Q |
117 |
tccttcatctgttccatctctgaattaaaaacaaccacgaatatcaaattttagaatagacaatctaaacttcatgcaaatacgatattgtaacaaaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43812921 |
tccttcatctgttccatctctgaattaaaaacaaccacgaatatcaaattttagaatagacaatctaaacttcatgcaaatacgatattgtaacaaaatt |
43813020 |
T |
|
| Q |
217 |
tgaatgatattagcaaatatataacgttggttagatcgaaccttgcaatagtttctctctggcttccttagctgccatttcctccttgctaattaccttt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43813021 |
tgaatgatattagcaaatatataacgttggttagatcgaaccttgcaatagtttctctctggcttccttagctgcgatttcctccttgctaattaccttt |
43813120 |
T |
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| Q |
317 |
gccttgggaattttgtctgaatttgatccttgactttttgatgaggcagaaccatcttcattaggtagttgttgatcc |
394 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43813121 |
gccttaggaattttgtctgaatttgatccttgactttttgatgaggcagaaccatcttcattaggtagttgttgatcc |
43813198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 3548405 - 3548257
Alignment:
| Q |
21 |
gcaaggtttgtgaatgcatttgacagtgccaaagcagatgaaacaccttttcctccgcctgacatgtcctcacctaatagcagtttggcaaatctctcct |
120 |
Q |
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||||| ||||| ||||||||||||| ||||||||| || ||||||||||||||||| || ||||| || || || ||||| ||||| ||||||||||||| |
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| T |
3548405 |
gcaagatttgttaatgcatttgacaatgccaaagctgaagaaacaccttttcctccaccagacatatcttcccccaatagtagtttagcaaatctctcct |
3548306 |
T |
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| Q |
121 |
tcatctgttccatctctgaattaaaaacaaccacgaatatcaaatttta |
169 |
Q |
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||||||||||||| |||||||| || |||||| ||||||||| |||| |
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| T |
3548305 |
tcatctgttccatttctgaatttaatccaaccataaatatcaaaattta |
3548257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 32999126 - 32999234
Alignment:
| Q |
17 |
acctgcaaggtttgtgaatgcatttgacagtgccaaagcagatgaaacaccttttcctccgcctgacatgtcctcacctaatagcagtttggcaaatctc |
116 |
Q |
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||||||||||||||| | |||||||||| ||||| || || |||||||| |||||| | ||||||||||| || |||| ||||| || |||||||| |
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| T |
32999126 |
acctgcaaggtttgttatggcatttgacaaagccaatgctgaagaaacaccatttcctgcacctgacatgtcttctcctagaagcagcttagcaaatctt |
32999225 |
T |
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| Q |
117 |
tccttcatc |
125 |
Q |
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||||||||| |
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| T |
32999226 |
tccttcatc |
32999234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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