View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_13 (Length: 405)
Name: NF19001_low_13
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 49099430 - 49099727
Alignment:
| Q |
12 |
ccaagaatataggctctctagaatgacccaacaatttgcaatatttctaattgtatatttttgaactaaataattttctacaaaaatttaccaaatgtat |
111 |
Q |
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| T |
49099430 |
ccaataatataggctctctagaatgacctaacaatttgcaatatttctaattgtatatttttgaactaaataattttctacaaaaatttaccaaatgtat |
49099529 |
T |
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| Q |
112 |
actatatttgtgcaaataatttctgagaatatcattctcatgtatataattctataactttgaaataagggagggccccctaaacaaggtgtattaaatt |
211 |
Q |
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| T |
49099530 |
actatatttgtgcaaataatttctgagaatatcattctcatgtatataattctataactttgaaataagggaggggcccctaaacaaggtgtattaaatt |
49099629 |
T |
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| Q |
212 |
ctatggtaataagtctttgtttgcaaagtaatcttgttaattaaagtagttacaggagtagaatcgtgagt---tgataattgatactgtaagtagta |
306 |
Q |
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| T |
49099630 |
ctatggtaataagtctttgtttgcaaagtaatcttgttaattaaagtagttacaggagtagaatcgtgagttgatgataattgatactgtaagtagta |
49099727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 299 - 386
Target Start/End: Original strand, 49099744 - 49099831
Alignment:
| Q |
299 |
aagtagtaattaatattttattggtacttaatgacaaacaagagataaacactcttattgcaaacaatttagcagtaataataatgac |
386 |
Q |
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| T |
49099744 |
aagtagtaattaatattttattggtacttaatgacaaacaagagataaacactcttattgcaaacaatttagcagtaataataatgac |
49099831 |
T |
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