View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_15 (Length: 375)
Name: NF19001_low_15
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 21 - 363
Target Start/End: Original strand, 6994550 - 6994892
Alignment:
| Q |
21 |
tcatgatttcatatattcatacgtaggaaagttacataatgccaccattagtttggtccaaaatgctatttagtttttatgttggaaaatacttgtgtga |
120 |
Q |
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| T |
6994550 |
tcatgctttcatatattcatacataggaaagttatataatgccaccattagtttggtccaaaatgctatttagtttttatgttggaaaatacttgtgtga |
6994649 |
T |
|
| Q |
121 |
atttgaccgtacaaaatttcgtctgttgagttgataatatcttctttgattaattaatgtgcgtataaaccgtgtatccccataatattcaatcgtattc |
220 |
Q |
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| T |
6994650 |
atttgaccgtacaaaatttcgtctgttgagttgataatatcttctttgattaattaatgtgcgtataaaccgtgtatccccataatattcaatcgtattc |
6994749 |
T |
|
| Q |
221 |
ttctctagaaaaaatatactaatattcaatcctaacttcaattgataaccaattttaactaccagaacgtgacgtttatgatggaggttccaacttttat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6994750 |
ttctctagaaaaaatatactaatattcaatcctaacttcaattgataaccaattttaactaccagaacgtgacgtttatgatggaggttccaacttttat |
6994849 |
T |
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| Q |
321 |
tgtacacgtatttttcctgctcctacctctctctacctatatt |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6994850 |
tgtacacgtatttttcctgctcctacctctctctacctatatt |
6994892 |
T |
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