View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_16 (Length: 374)
Name: NF19001_low_16
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 244428 - 244065
Alignment:
| Q |
1 |
caaccttggagaggagcttcattatccatttccatcaacactttgtaaaagacatcaacattacaaggaagagccaaaggtccttggcagctataaccat |
100 |
Q |
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| T |
244428 |
caaccttggagaggagcttcattatccatttccatcaacactttgtaaaagacatcaacattacaaggaagagccaaaggtccttggcagctataaccat |
244329 |
T |
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| Q |
101 |
attctgattcagcttcttcaagcaacatcttgaacaaaggatgattagcatactcagttttgatcacaaacctttgcatttgaggtccaacgtacaccga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244328 |
attctgattcagcttcttcaagcaacatcttgaacaaaggatgattagcatactcagttttgatcacaaacctttgcatttgaggtccaacgtacaccga |
244229 |
T |
|
| Q |
201 |
aaagcatccctccggggccactttctttcgtctattttcttcgccccgtggaagaccaggccatgatttgctccttcttgttgttggagtcactgatgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244228 |
aaagcatccctccggggccactttctttcgtctattttcttcgccccgtggaagaccaggccatgatttgctccttcttgttgttggagtcactgatgat |
244129 |
T |
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| Q |
301 |
gaatatgatttactcttgtgtcctcctcctatggacttgcatctctcccacgtttttgtgatga |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244128 |
gaatatgatttactcttgtgtcctcctcctatggacttgcatctctcccacgtttttgtgatga |
244065 |
T |
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