View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_19 (Length: 356)
Name: NF19001_low_19
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 8568160 - 8567971
Alignment:
| Q |
20 |
tcacccacatgcatacctacgtgtgtctcactatactctattttttgttttggtcattctcttgttattattgattaattttgatttataataatcaact |
119 |
Q |
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| T |
8568160 |
tcacccacatgcatacctacgtgtgtctcactatactctattttttgttttggtcattctcttgttattattgattaattttgatttataataatcaact |
8568061 |
T |
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| Q |
120 |
aatttaaggttgattatctcactcacaagtgtcacatgtgtgagtgagcctttgtcattccatttttcatgctaaataagtaattaatat |
209 |
Q |
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| T |
8568060 |
aatttaaggttgattatctcactcacaagtgtcacatgtgttagtgagccttattcatttcatttttcatgctaaataagtaattaatat |
8567971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 8566937 - 8566884
Alignment:
| Q |
205 |
aatatcaccaattatagttacacacttaattttgtagcattagttcaacaactc |
258 |
Q |
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| T |
8566937 |
aatatcaccaattatagttagacacttaattttgtagcattagttcaacaactc |
8566884 |
T |
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