View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_2 (Length: 827)
Name: NF19001_low_2
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 374 - 810
Target Start/End: Complemental strand, 37817424 - 37816989
Alignment:
| Q |
374 |
tggtagtatcaaatatggccaaattagtatttatagactatgtagcactgatacctcagcatgaatgcatgtatgagtgtccaatatttgttagtgttcg |
473 |
Q |
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| T |
37817424 |
tggtagtatcaaatatggccaaattagtatttatagactatgtagcactgatacctcagcatgaaggcatgtatgagtgtccaatatttgttagtgttcg |
37817325 |
T |
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| Q |
474 |
acaatcataagaacacacattgattacattcaattactttcattttgtaaaattattaccagtatttacatctcagtgtcaatgtgtgtttagtctccat |
573 |
Q |
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| T |
37817324 |
acaatcataagaacacacat-gattacattcaattactttcattttttaaaattattaccagtatttacatctcagtgtcaatgtgtgtttagtctccat |
37817226 |
T |
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| Q |
574 |
gtcaatgcttcataatttataggtggtgggctgtctctactttacaagttcatttgctgtgaagaactaattcaaattccattctctttgctgcaggatt |
673 |
Q |
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| T |
37817225 |
gtcaatgcttcataatttataggtggtgggctgtctctactttacaagttcgtttgctgtgaagaactaattaaaattccattctctttgctgcaggttt |
37817126 |
T |
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| Q |
674 |
gaaacccaacacactataccaatatcaatgtggagatccttctttaccagcaatgagtgatgttcattattttaggacaatgccagtttcaggccccaag |
773 |
Q |
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| T |
37817125 |
gaaacccaacacactataccaatatcaatgtggagatccttctttaccagcaatgagtgatgttcattattttaggacaatgccagtttcaggccccaag |
37817026 |
T |
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| Q |
774 |
agctaccctagtagaatcgcagtggtcggagacttag |
810 |
Q |
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| T |
37817025 |
agctaccctagtagaatcgcagtggtcggagacttag |
37816989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 37817916 - 37817557
Alignment:
| Q |
17 |
cacagagggtagagctttgcttataaatcataatctatttcattcctattacatgatatcaacaaaaacatcagtaaaatatctcaaaacaacctttgtg |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37817916 |
cacagagggtagagctttgcttataa-tcataatctatttcattcctattacatgatatcaacaaaaacatcagtaaaataactcaaaacaacctttgtg |
37817818 |
T |
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| Q |
117 |
tcatgttaacaaattaagtctcctctctcattaccttcttccccataaaatacatgaattttaagtctgattcattaagagatcattctaccgattccaa |
216 |
Q |
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| T |
37817817 |
tcatgttaacaaattaagtctcctctctcattaccttcttccccataaaatacatgaattttaagtctgattcattaagagatcattctaccgattccaa |
37817718 |
T |
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| Q |
217 |
agatctagcaccaacttaaattgaatcacgtacatctccactgaattctcataactttgtctcaccttttttataccttcagcttttctaggatacacgt |
316 |
Q |
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| T |
37817717 |
agatctagcaccaacataaattgaatcacgtacatctccgctgaattctcataactttgtctcaccttttttataccttcaacttttctaggatacacgt |
37817618 |
T |
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| Q |
317 |
tnnnnnnngaaattctgatacttctagagtatatatcagtgagtatccatggactattggt |
377 |
Q |
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| T |
37817617 |
taaaaaaagaaattctgatacttctagagtatgtatcagtgagtatccatggactattggt |
37817557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 656 - 810
Target Start/End: Complemental strand, 37809675 - 37809521
Alignment:
| Q |
656 |
tctctttgctgcaggattgaaacccaacacactataccaatatcaatgtggagatccttctttaccagcaatgagtgatgttcattattttaggacaatg |
755 |
Q |
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| T |
37809675 |
tctctttgctgcaggattaaagcccaacacactatatcaatatcaatgtggagatccttctttgtcagcaatgagtgatgttcattatttcagaacaatg |
37809576 |
T |
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| Q |
756 |
ccagtttcaggccccaagagctaccctagtagaatcgcagtggtcggagacttag |
810 |
Q |
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| T |
37809575 |
ccggtttcaggtcccaagagttaccctagcagaatcgccgtggttggagacttag |
37809521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 498 - 558
Target Start/End: Complemental strand, 27020472 - 27020412
Alignment:
| Q |
498 |
tacattcaattactttcattttgtaaaattattaccagtatttacatctcagtgtcaatgt |
558 |
Q |
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| T |
27020472 |
tacattcaattactttcattttctaaaaatattaccggtgtgtacatgtcagtatcaatgt |
27020412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 531
Target Start/End: Original strand, 7250973 - 7251014
Alignment:
| Q |
490 |
acattgattacattcaattactttcattttgtaaaattatta |
531 |
Q |
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| T |
7250973 |
acattgattatattcaattactttcattttctcaaattatta |
7251014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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