View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_20 (Length: 354)
Name: NF19001_low_20
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 338
Target Start/End: Complemental strand, 23133799 - 23133475
Alignment:
| Q |
9 |
atcatcaagattttctgaagttatatatttgacttcaaatagatcctaacttcatgaaatattaaggttatattatagtaaagcatgcaaatttattcaa |
108 |
Q |
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| T |
23133799 |
atcatcaagatcttctgaagttatatatttgacttcaaatagatcctaacttcatgaaatattaaggttatattatagtaaagcatgcaaatttattcaa |
23133700 |
T |
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| Q |
109 |
ctataagccagatatattcatttttgggcagttttcttggtgtatgttaggaatcttgatgagtttgacgtaatcacagtggtgccgagattttgttcat |
208 |
Q |
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| T |
23133699 |
ttataagccagatatattcatttttgtgcagttttcttggtgtatgttaggaatcttgatgagtttgacgtaatcacagtggtaccgagattttgttgat |
23133600 |
T |
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| Q |
209 |
gttttaaagtgtaatttttgtcaaaattacatatacatatcgtgattctgccaaactcaccatcaatcgatttcaggcatgcacttcatgtgtttctttc |
308 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||| |||||| |
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| T |
23133599 |
gttttaaagtgtaatttttgccaaaattacatatacatatcgtgattctgccaaactcaccatcaa-----ttcaagcatgcacttagtgtagttctttg |
23133505 |
T |
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| Q |
309 |
tttgttttagagttgacttatattcatttt |
338 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
23133504 |
tttgttttagagttgacttatattcatttt |
23133475 |
T |
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