View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_21 (Length: 353)
Name: NF19001_low_21
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 41491664 - 41491324
Alignment:
| Q |
1 |
aaagaagcgaaatgtgtaatgtcatggctagaaagaagtggttagtaatagttacagagtagcgttcttttcctgttggcatcaccctgtgaagtgttga |
100 |
Q |
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| T |
41491664 |
aaagaagcgaaatgtgtaatgtcatggctagaaagaagtggttagtaatagttacagagtagcgttcttttcctgttggcatcaccctgtgaagtgttga |
41491565 |
T |
|
| Q |
101 |
cctgcaagagtaatagcagaaactaagaatgatat-----aaacagttgataaaagaaatgtattataagttgctagatgatggaatttaccggtataaa |
195 |
Q |
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| T |
41491564 |
cctgcaagagtaatagcagaaactaagaatgatatgatataaacagttgataaaagaaatgtattataagttgctagatgatggaatttaccggtataaa |
41491465 |
T |
|
| Q |
196 |
caatttgtccatctctccatcatgtccccaatgttcacaattatggccctgcatattcaaacataaaacacctaacactagaagggaaaggaaaagcata |
295 |
Q |
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| T |
41491464 |
caatttgtccatctctccatcatgtccccaatgttcacaattatggccctgcatattcaaacataaaacacctaacactagaagggaaaggaaaagcata |
41491365 |
T |
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| Q |
296 |
tagacttaaacgtggtagtaacatattatttacaaagttct |
336 |
Q |
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| T |
41491364 |
tagacttaaacgtggtggtaacatattatttacaaagttct |
41491324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 52 - 276
Target Start/End: Complemental strand, 41483727 - 41483507
Alignment:
| Q |
52 |
ttacagagtagcgttcttttcctgttggcatcaccctgtgaagtgttgacctgcaagagtaatagcagaaactaagaatgatataaacagttgataaaag |
151 |
Q |
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| T |
41483727 |
ttacagaatagcgttcttttccggttggcatcaccctgtgaagggttgacctgcaagagtaatgacagaaat---gatttatataaaca-ttgataaaag |
41483632 |
T |
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| Q |
152 |
aaatgtattataagttgctagatgatggaatttaccggtataaacaatttgtccatctctccatcatgtccccaatgttcacaattatggccctgcatat |
251 |
Q |
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| T |
41483631 |
aaataacttttaagtgaatgagtgatggaatttactggtatacacaatttgtccatctctccattatgtccccaatgttcacaattatggccctgcatat |
41483532 |
T |
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| Q |
252 |
tcaaacataaaacacctaacactag |
276 |
Q |
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| T |
41483531 |
tcaaacataaatcacctaacactag |
41483507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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