View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_22 (Length: 349)
Name: NF19001_low_22
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 28897768 - 28898102
Alignment:
| Q |
1 |
aaatgtggaatccaattcgctccactgtttgagtatagacattggaaaaggccctcttgttccactaccacaaatacccgaacagtgccaaataggaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28897768 |
aaatgtggaatccaattcgctccactgtttgagtatagacattggaaaaggccctcttgttccactaccacaaatacccgaacagtgccaaataggaata |
28897867 |
T |
|
| Q |
101 |
tcaagactctccactccctttctttccgatgaagtgattttaatattcacatcctcttcatcgctgtcacttaaaataataacatcattgacagtctcct |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28897868 |
tcaggactctccactccctttctttccgatgaagttattttaatattcacatcctcttcatcgctgtcacttaaaataataacatcattgacagtcgcct |
28897967 |
T |
|
| Q |
201 |
taacaagatcagcaacagcagggcttcgcctttcctttactgtctgattggcatccatgttagtactcagatttctgcaatctacaccaacagaagcaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28897968 |
taacaagatcagcaacagcagggcttcgcctttcctttactgtctgattggcatccatgttagtactcagatttctgcaatctacaccaacagaagcaga |
28898067 |
T |
|
| Q |
301 |
tatagtgttacttggttgaggcaagctacattttg |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
28898068 |
tatagtgttacttggttgaggcaagctacattttg |
28898102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 3 - 334
Target Start/End: Original strand, 28921771 - 28922102
Alignment:
| Q |
3 |
atgtggaatccaattcgctccactgtttgagtatagacattggaaaaggccctcttgttccactaccacaaatacccgaacagtgccaaataggaatatc |
102 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| || |||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||||||| |
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|
| T |
28921771 |
atgtggaatccaattcactccagtgtttgagtacagtcattggaaaaggccctcttgttccacagccacgaacacccgaacagtaccaaataggaatatc |
28921870 |
T |
|
| Q |
103 |
aagactctccactccctttctttccgatgaagtgattttaatattcacatcctcttcatcgctgtcacttaaaataataacatcattgacagtctcctta |
202 |
Q |
| |
|
|| ||||||||||||||||||| | |||||||| | || |||| |||||||||||||||| ||||||||||| | || |||||||||| || ||||| |
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|
| T |
28921871 |
aatactctccactccctttcttccagatgaagttacttcaatactcacatcctcttcatcactgtcacttaacactgtagcatcattgacgatcacctta |
28921970 |
T |
|
| Q |
203 |
acaagatcagcaacagcagggcttcgcctttcctttactgtctgattggcatccatgttagtactcagatttctgcaatctacaccaacagaagcagata |
302 |
Q |
| |
|
|| |||||||||| | || |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||| || |||||||||||| |
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|
| T |
28921971 |
acgggatcagcaaccgaagcgcttcgcctttcctttactgcatgattggcatccatgtcagtactcagatttctgcaatttacatcatcagaagcagata |
28922070 |
T |
|
| Q |
303 |
tagtgttacttggttgaggcaagctacatttt |
334 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| |
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|
| T |
28922071 |
tagtgttacttgattgaggcaagccacatttt |
28922102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 334
Target Start/End: Original strand, 28912275 - 28912603
Alignment:
| Q |
3 |
atgtggaatccaattcgctccactgtttgagtatagacattggaaaaggccctcttgttccactaccacaaatacccgaacagtgccaaataggaatatc |
102 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| || |||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||||||| |
|
|
| T |
28912275 |
atgtggaatccaattcactccagtgtttgagtacagtcattggaaaaggccctcttgttccacagccacgaacacccgaacagtaccaaataggaatatc |
28912374 |
T |
|
| Q |
103 |
aagactctccactccctttctttccgatgaagtgattttaatattcacatcctcttcatcgctgtcacttaaaataataacatcattgacagtctcctta |
202 |
Q |
| |
|
|| ||||||| ||||||||||| | |||||||||| |||| ||||||||||||||||||| ||||||||||||| |||||||||||||| | ||||| |
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|
| T |
28912375 |
aatactctccgctccctttcttccagatgaagtgactttactattcacatcctcttcatcactgtcacttaaaacaataacatcattgatgattgcctta |
28912474 |
T |
|
| Q |
203 |
acaagatcagcaacagcagggcttcgcctttcctttactgtctgattggcatccatgttagtactcagatttctgcaatctacaccaacagaagcagata |
302 |
Q |
| |
|
|| |||| | ||||| | ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| | ||||||||||| |
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|
| T |
28912475 |
acgggatctgaaacagtaacgcttcgcctttcctttactgtatgattggcatccatgttaatactcagatttctgcaatctacatcctcagaagcagatg |
28912574 |
T |
|
| Q |
303 |
tagtgttacttggttgaggcaagctacatttt |
334 |
Q |
| |
|
||| |||||||||||||||||| ||||||| |
|
|
| T |
28912575 |
tag---tacttggttgaggcaagccacatttt |
28912603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 15 - 334
Target Start/End: Original strand, 28930851 - 28931170
Alignment:
| Q |
15 |
attcgctccactgtttgagtatagacattggaaaaggccctcttgttccactaccacaaatacccgaacagtgccaaataggaatatcaagactctccac |
114 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||||||||| ||||||||| ||| | |||||||||||| |||||||| | || |||| |||| |||| |
|
|
| T |
28930851 |
attcgctccagcgtttgagtacagacattgaaaaaggcccttttgttccaccacctcgaatacccgaacaatgccaaatggaaacatcagaactcaccac |
28930950 |
T |
|
| Q |
115 |
tccctttctttccgatgaagtgattttaatattcacatcctcttcatcgctgtcacttaaaataataacatcattgacagtctccttaacaagatcagca |
214 |
Q |
| |
|
|||||||||||| | |||||||| ||||||||| |||||||||||||| ||||||||||| | ||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
28930951 |
tccctttctttctgctgaagtgactttaatattaacatcctcttcatcactgtcacttaacacaataaaatcattgacagtcggcttaacaggatcagca |
28931050 |
T |
|
| Q |
215 |
acagcagggcttcgcctttcctttactgtctgattggcatccatgttagtactcagatttctgcaatctacaccaacagaagcagatatagtgttacttg |
314 |
Q |
| |
|
|| | |||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
28931051 |
accataacgctttgaatttcctttactgtctgattggcatccatgttagtattcagatttctgcaatctacatcataagaagcagatatagtgttacttg |
28931150 |
T |
|
| Q |
315 |
gttgaggcaagctacatttt |
334 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
28931151 |
gttgaggcaagccacatttt |
28931170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 28888104 - 28888417
Alignment:
| Q |
1 |
aaatgtggaatccaattcgctccactgtttgagtatagacattggaaaaggccctcttgttccactaccacaaatacccgaacagtgccaaataggaata |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||| |||||| ||||| | |||||| | |||| |
|
|
| T |
28888104 |
aaatgtggaatccaattcgctccagtgtttgagtacagacattggaaaaggcccttttgtttcactaccacgaatacctgaacaataccaaatggaaata |
28888203 |
T |
|
| Q |
101 |
tcaagactctccactccctttct---ttccgatgaagtgattttaatattcacatcctcttcatcgctgtcacttaaaataataacatcattgacagtct |
197 |
Q |
| |
|
||| || |||||||||||||||| | | || ||||| | | ||||||||||| |||||||| ||||||||||| | |||||||||||||||| || |
|
|
| T |
28888204 |
tcaggattctccactccctttcttgctgctgaagaagtaactctaatattcaca---tcttcatcactgtcacttaacacaataacatcattgacaatcg |
28888300 |
T |
|
| Q |
198 |
ccttaacaagatcagcaacagcagggcttcgcctttcctttactgtctgattggcatccatgttagtactcagatttctgcaatctacaccaacagaagc |
297 |
Q |
| |
|
|||| ||| |||| ||||| | |||| ||||||||||||||| |||| |||||||| |||| || |||||||||||||||||| || ||||||| |
|
|
| T |
28888301 |
ccttgacaggatccgcaaccataacgcttttcctttcctttactgtttgatcagcatccatattagaacctagatttctgcaatctacatcagcagaagc |
28888400 |
T |
|
| Q |
298 |
agatatagtgttacttg |
314 |
Q |
| |
|
| |||||| ||||||| |
|
|
| T |
28888401 |
atatatagcattacttg |
28888417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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