View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_24 (Length: 327)
Name: NF19001_low_24
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 12141441 - 12141127
Alignment:
| Q |
1 |
taagtcagaatccaatcattgcccaatccttcttcttccttctcccnnnnnnncctcggacagaacgaaacctgtcaacattgtgttggctttcttcggc |
100 |
Q |
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| T |
12141441 |
taagtcagaatccaatcattgcctaatccttcttcttccttctccctttttttcctcggacagaacgaaacctgtcaacattgtgttggctttcttcggc |
12141342 |
T |
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| Q |
101 |
ctgctactcatcctcctctcctgagtgttttgatccactgccatatgaaaatgaaaaatatatgtcaattattacattgcataacccaaatttgaagtag |
200 |
Q |
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| T |
12141341 |
ctgctactcatcctcctttcctgagtgttttgatgcactgccatatgaaaatgaaaaatatatgtcaattattacattccataacccaaatttgaagtag |
12141242 |
T |
|
| Q |
201 |
cataggaatgtttctgttatacgtttttgcaatgtgaaaagtctcatcttgaaaaaatcaagatgtatactatcattcagattaaaacttcaaccaaatc |
300 |
Q |
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| T |
12141241 |
caaaggaatgtttctgttatacgattttgcaatgtgaaaagtctcatcttgaaaaaatcaagatgtatactatcattcagactaaaacttcaaccaaatc |
12141142 |
T |
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| Q |
301 |
aaactcaaccatgat |
315 |
Q |
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| T |
12141141 |
aaactcaaccatgat |
12141127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 263
Target Start/End: Complemental strand, 12142489 - 12142231
Alignment:
| Q |
2 |
aagtcagaatccaatcattgcccaatccttcttcttccttctcccnnnnnnncctcggacagaacgaaacctgtcaacattgtgttggctttcttcggcc |
101 |
Q |
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||||||| |||||||||||||| |||||| ||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||| |||||| | |
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| T |
12142489 |
aagtcaggatccaatcattgcctaatcct-cttcttccttctccctttttttccttagacagaacgaaacctttcaacgttgtgttggctatcttcgttc |
12142391 |
T |
|
| Q |
102 |
tgctactcatcctcctctcctgagtgttttgatccactgccatatgaaaatgaaaaatatatgtcaattattacattgcataacccaaatttgaagtagc |
201 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |||||| |||||| | ||||||||||||||| | ||||| ||||||||||| || |
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| T |
12142390 |
tgctactcatcctcctcttctgagtgttttgatccactgccatgcgaaaataaaaaattt--gtcaattattacattccttaacctaaatttgaagttgc |
12142293 |
T |
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| Q |
202 |
ataggaatgtttctgttatacgtttttgcaatgtgaaaagtctcatcttgaaaaaatcaaga |
263 |
Q |
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| T |
12142292 |
aaaggaatgattctgtaataagttttttcaatgtgaaaagtctcatcttgaaaaaatcaaga |
12142231 |
T |
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