View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19001_low_27 (Length: 312)

Name: NF19001_low_27
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19001_low_27
NF19001_low_27
[»] chr5 (1 HSPs)
chr5 (16-307)||(10441059-10441350)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 10441350 - 10441059
Alignment:
Q  16 acgaacaagggacaacaaannnnnnnaaggcctcaatcagaaatcattcatatattataaaaatattttaaaacctcaaaactaagatatatcacagcaa 115  Q
    |||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10441350 acgaacaaaggacaacaaatttttttaaggcctcaatcagaaatcattcatatattataaaaatattttaaaacctcaaaactaagatatatcacagcaa 10441251  T
Q  116 tacaacaacatcagccaagccttattaactcccccacacagggtgagatgcttctgagcaataaatcagaaatatttcatcacatgcttatttctcttat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10441250 tacaacaacatcagccaagccttattaactcccccacacagggtgagatgcttctgagcaataaatcagaaatatttcatcacatgcttatttctcttat 10441151  T
Q  216 taacaatagactgcaaatcagttaaataatgataatatagttaccttaatgtcacttcctcggaaaagaatgcattcataaaccttgtcact 307  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10441150 taacaatagtctgcaaatcagttaaataatgataatatagttaccttaatgtcacttcctcggaaaagaatgcattcataaaccttgtcact 10441059  T

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