View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19001_low_29 (Length: 297)
Name: NF19001_low_29
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 41876053 - 41876331
Alignment:
| Q |
1 |
gggaactgtgacttgcttttgctaagcattgctctttgacatgtttagttgatcttgcagtggccaaggtaccatatccttggagcttttggaacaagcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41876053 |
gggaactgtgacttgcttttgctaagcattgctctttgacatgtttagttgatcttgcagtggccaaggtaccatatccttggagcttttggaacaagcc |
41876152 |
T |
|
| Q |
101 |
cctcagattgatactcttgtagtacctataagtggtttgttcttatttttatgttaatccatcaaccaaatgttttaaaattttcataaattttagtatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41876153 |
cctcagattgatactcttgtagtacctataagtggtttgttctcatttttatgttaatccatcaaccaaatgttttaaaattttcataaattttagtatt |
41876252 |
T |
|
| Q |
201 |
ctcatctcgattttccaacaaaatgaaaattgtaggcagtggtatggcatcgggagtagcattagctgccaaggccatt |
279 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41876253 |
ctcttctcgattttccaacaaaatgaaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccatt |
41876331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 273
Target Start/End: Complemental strand, 40867984 - 40867741
Alignment:
| Q |
30 |
tgctctttgacatgtttagttgatcttgcagtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtacctat |
129 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| | ||||| ||||| ||||| || |
|
|
| T |
40867984 |
tgctctttgacatgtttgtttgatcttgcagtggccagggtaccatatccttggagcttctggaacaagcccctcaactagatacacttgtggtaccaat |
40867885 |
T |
|
| Q |
130 |
aagtggtttgttcttatttttatgttaatccatcaacc-aaatgttttaaaattttcataaattttagtattctcatctcgattttccaacaaaatgaaa |
228 |
Q |
| |
|
|||||||||||| |||| |||| || |||||| || |||||||| ||||||| ||| ||||| |||| | | ||| ||||||||||| |||||||| |
|
|
| T |
40867884 |
aagtggtttgtttgctttttgatgtcaaaccatcatccaaaatgtttcaaaatttgcattgattttggtatccccttcttgattttccaac-aaatgaaa |
40867786 |
T |
|
| Q |
229 |
attgtaggcagtggtatggcatcgggagtagcattagctgccaag |
273 |
Q |
| |
|
| || ||| ||||| || ||| ||||||||||| ||||||||| |
|
|
| T |
40867785 |
actgcaggaggtggtttgatatcaggagtagcattggctgccaag |
40867741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 29 - 275
Target Start/End: Complemental strand, 24817771 - 24817520
Alignment:
| Q |
29 |
ttgctctttgacatgttta---gttgatcttgcagtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtac |
125 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || | |||||| |||||| || ||||| |||||||||| |
|
|
| T |
24817771 |
ttgctctttgacatgtttgctggttgatcttatagtggccaaggtaccatatccttggagtttcttgaacaaatccctcaaatcgatacacttgtagtac |
24817672 |
T |
|
| Q |
126 |
ctataagtggtttgt--tcttatttttatgttaatccatcaaccaaatgttttaaaattttcataaattttagtattctcatctcgattttccaacaaaa |
223 |
Q |
| |
|
| ||||||||||||| ||| |||||| || ||||||||| | |||||||| | ||||| |||| | |||||||| ||| | |||||||| |||||| |
|
|
| T |
24817671 |
caataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgattttgttacaaaa |
24817572 |
T |
|
| Q |
224 |
tgaaaattgtaggcagtggtatggcatcgggagtagcattagctgccaaggc |
275 |
Q |
| |
|
||| | ||| |||| | |||||| | | ||| ||||| ||||||||||||| |
|
|
| T |
24817571 |
tgatacttgcaggcggcggtatgatagcaggaatagcaatagctgccaaggc |
24817520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 275
Target Start/End: Complemental strand, 24800695 - 24800444
Alignment:
| Q |
29 |
ttgctctttgacatgttta---gttgatcttgcagtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtac |
125 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || | |||||| |||||| || ||||| |||||||||| |
|
|
| T |
24800695 |
ttgctctttgacatgtttgctggttgatcttatagtggccaaggtaccatatccttggagtttcttgaacaaatccctcaaatcgatacacttgtagtac |
24800596 |
T |
|
| Q |
126 |
ctataagtggtttgt--tcttatttttatgttaatccatcaaccaaatgttttaaaattttcataaattttagtattctcatctcgattttccaacaaaa |
223 |
Q |
| |
|
| ||||||||||||| ||| |||||| || ||||||||| | |||||||| | ||||| |||| | |||||||| ||| | |||||||| |||||| |
|
|
| T |
24800595 |
caataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgattttgttacaaaa |
24800496 |
T |
|
| Q |
224 |
tgaaaattgtaggcagtggtatggcatcgggagtagcattagctgccaaggc |
275 |
Q |
| |
|
||| | ||| ||| | |||||| | | ||| ||||| ||||||||||||| |
|
|
| T |
24800495 |
tgatacttgcaggtggcggtatgatagcaggaatagcaatagctgccaaggc |
24800444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University