View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_33 (Length: 271)
Name: NF19001_low_33
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_33 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 28897459 - 28897719
Alignment:
| Q |
10 |
aagaaaataaaaacatgtcagagatacaccagagaaataaagattataattccatctctgaaaaaattgtcaaaggaaaaagttttttctttcatt-caa |
108 |
Q |
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| T |
28897459 |
aagaaaataaaaacatgtcagagatacaccagagaaataaagattataattccctctctgaaaaaattgtcaaaggaaat--ttttttttttcttttcaa |
28897556 |
T |
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| Q |
109 |
tagcagcatttcaaacaggcagctacttggtgaaaacaaaagtatataactatattaattatcaaaactggtgatgttattaaatagagttgatttccct |
208 |
Q |
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| T |
28897557 |
tagcagcatttcaaacaggcagctacttggtgaaaacaaaagtatataactatattaattatcaaaactggtgatgttattaaatagagatgatttccct |
28897656 |
T |
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| Q |
209 |
tcattttgacttacttttacattagggaaaaaacagcttaagtgcatccctcagaagcattgc |
271 |
Q |
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| T |
28897657 |
tcattttgacttactttcacattagggaaaaaacagcttaagtgcatccctcagaagcattgc |
28897719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 109 - 271
Target Start/End: Original strand, 28912062 - 28912224
Alignment:
| Q |
109 |
tagcagcatttcaaacaggcagctacttggtgaaaacaaaagtatataacta--tattaattatcaaaactggtgatgttattaaatagagttgatttcc |
206 |
Q |
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| T |
28912062 |
tagcagcatttcaaacagtcagccatttggtgaaaacaaaattatatatataactactgattatcaacactggtgatgt-attag-tagagatgatttcc |
28912159 |
T |
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| Q |
207 |
cttcattttgacttacttttacattagggaaaaaacagcttaagtgcatccctcagaagcattgc |
271 |
Q |
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| T |
28912160 |
cttcattttgatttactttgacattagggaaaaaagagcttaagtgcatccctcagaagcattgc |
28912224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 271
Target Start/End: Original strand, 28930623 - 28930791
Alignment:
| Q |
104 |
ttcaatagcagcatttcaaacaggcagcta--cttggtgaaaacaaaagtatataactatattaattatcaaaactggtgatgttattaaatagagttga |
201 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||| |||||||||||| || || || ||||||| ||||||||| |||| ||||||| ||| |
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| T |
28930623 |
ttcactagcagcatttcaaacaggcagctatttttggtgaaaccaaaagtatatacctctactatttatcaacactggtgat-atattcaatagagatga |
28930721 |
T |
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| Q |
202 |
tttcccttcattt-tgacttacttttacattagggaaaaaacagcttaagtgcatccctcagaagcattgc |
271 |
Q |
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| T |
28930722 |
tttcccttcatttattatttactttcacatcggggaaaaaagagc-taagtgcatccctcaaaagtattgc |
28930791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 271
Target Start/End: Original strand, 28887886 - 28888055
Alignment:
| Q |
104 |
ttcaatagcagcatttcaaacaggcagctacttggtgaaaacaaaagtatataactatattaattatcaaaactg--gtgatgttattaaatagagttga |
201 |
Q |
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| T |
28887886 |
ttcattagcagcatttgaaacaagcagctatttgtagagaacaaaagtatataactctactaactatcaacactgatgtgatg-tactcaatagaggtga |
28887984 |
T |
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| Q |
202 |
tttcccttcattttgacttacttttacatt-agggaaaaaacagcttaagtgcatccctcagaagcattgc |
271 |
Q |
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| T |
28887985 |
tttcccttcatattgatttactttccctttggggggaaaaagagcccaagtgcatccctcagaagcattgc |
28888055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 28921683 - 28921720
Alignment:
| Q |
234 |
ggaaaaaacagcttaagtgcatccctcagaagcattgc |
271 |
Q |
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| T |
28921683 |
ggaaaaaagagcttaagtgcatcccttagaagcattgc |
28921720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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