View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_35 (Length: 265)
Name: NF19001_low_35
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 42659070 - 42658826
Alignment:
| Q |
14 |
gaatttaaatgacctctaattctgaaatgccataatttccctttagaatacaacaaattctcatcacaaagaaactcccaagaaaaccacttctctatca |
113 |
Q |
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| T |
42659070 |
gaatttaaatgacctctaattctgaaatgccataatttccctttagaatacaacaaattctcatcacaaagaaactcccaagaaaaccatttttctatca |
42658971 |
T |
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| Q |
114 |
ttcgatctacgtcatgtacaagtacatctgaaccattcccacctctagctagaacaccagcagtgtaaatggatgccattctaccaggtgactcggtcga |
213 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42658970 |
ttcgatctacatcatgtacaagtacatctgaaccattcccacctctagctagaacactagcagtgtaaatggatgccattctaccaggtgactcggtcga |
42658871 |
T |
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| Q |
214 |
atcgccactcggtccatcgaccactatgacatcccaattcttctc |
258 |
Q |
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| T |
42658870 |
aaggccactcggtccatcgaccactatgacatcccaattcttctc |
42658826 |
T |
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