View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19001_low_37 (Length: 263)

Name: NF19001_low_37
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19001_low_37
NF19001_low_37
[»] chr7 (9 HSPs)
chr7 (18-251)||(33902207-33902440)
chr7 (135-243)||(24211326-24211434)
chr7 (105-243)||(46603696-46603832)
chr7 (150-243)||(9603484-9603577)
chr7 (150-243)||(9831055-9831148)
chr7 (150-232)||(4040862-4040948)
chr7 (146-206)||(45996484-45996544)
chr7 (135-179)||(3399435-3399479)
chr7 (164-236)||(30003801-30003873)
[»] scaffold0192 (1 HSPs)
scaffold0192 (105-243)||(13360-13498)
[»] chr8 (6 HSPs)
chr8 (105-243)||(25267030-25267168)
chr8 (133-243)||(2233868-2233978)
chr8 (135-243)||(32162764-32162870)
chr8 (136-243)||(39907939-39908046)
chr8 (136-197)||(17072689-17072750)
chr8 (136-197)||(17575521-17575582)
[»] chr3 (16 HSPs)
chr3 (106-243)||(41242179-41242316)
chr3 (146-243)||(16041133-16041230)
chr3 (146-243)||(16053073-16053170)
chr3 (105-243)||(11076939-11077076)
chr3 (146-243)||(16037577-16037674)
chr3 (135-235)||(17517888-17517988)
chr3 (106-232)||(37820798-37820924)
chr3 (146-243)||(39933347-39933443)
chr3 (141-240)||(9821003-9821102)
chr3 (135-243)||(28389387-28389501)
chr3 (100-243)||(31229723-31229866)
chr3 (139-243)||(5050593-5050697)
chr3 (135-172)||(34730789-34730826)
chr3 (135-223)||(50744732-50744820)
chr3 (135-172)||(34870135-34870172)
chr3 (188-244)||(6276753-6276809)
[»] chr6 (6 HSPs)
chr6 (135-243)||(12185707-12185815)
chr6 (136-243)||(9456209-9456316)
chr6 (135-243)||(3441218-3441326)
chr6 (135-243)||(10068183-10068289)
chr6 (135-227)||(25070402-25070494)
chr6 (195-244)||(10483415-10483464)
[»] chr4 (8 HSPs)
chr4 (136-243)||(3067606-3067713)
chr4 (136-243)||(5050426-5050533)
chr4 (147-235)||(4059118-4059206)
chr4 (137-209)||(31040283-31040356)
chr4 (135-226)||(43967986-43968077)
chr4 (141-243)||(18371146-18371248)
chr4 (139-209)||(36622116-36622186)
chr4 (135-243)||(45891795-45891904)
[»] chr1 (7 HSPs)
chr1 (135-243)||(25808484-25808592)
chr1 (107-243)||(46298512-46298648)
chr1 (135-243)||(31501054-31501162)
chr1 (136-218)||(19339915-19339997)
chr1 (135-242)||(49423341-49423448)
chr1 (135-243)||(23392714-23392823)
chr1 (164-243)||(51540737-51540817)
[»] chr2 (4 HSPs)
chr2 (140-243)||(2126184-2126287)
chr2 (136-225)||(11152190-11152279)
chr2 (138-200)||(22348730-22348792)
chr2 (138-209)||(22345686-22345757)
[»] chr5 (5 HSPs)
chr5 (137-243)||(35075847-35075954)
chr5 (146-231)||(31559096-31559181)
chr5 (135-188)||(5150835-5150888)
chr5 (135-242)||(10020725-10020829)
chr5 (182-243)||(7802030-7802090)
[»] scaffold0402 (1 HSPs)
scaffold0402 (136-218)||(2978-3060)
[»] scaffold1786 (1 HSPs)
scaffold1786 (135-243)||(365-473)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 33902440 - 33902207
Alignment:
Q  18 gatattaatcaacaatggtattgaatgaacatcaaaaagttgattctacttggatttatttcaacacaccatataagaatacaatgagaaatgctaactt 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||    
T  33902440 gatattaatcaacaatggtatcgaatgaacatcaaaaagttgattctacttgcatttatttcaacacaccatacaagaatccaatgagaaatgctaactt 33902341  T
Q  118 atgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagac 217  Q
    ||| |||||| ||||| ||||| |||||||||||| ||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||| |||||||    
T  33902340 atgccctgaaggcaaaagttaaaaaattaaagatagaaatattttattgaaaattatgcatttaatattttagaaatttaaaatcttatcttttcaagac 33902241  T
Q  218 ataatttatgatttaattccatttttcggatatt 251  Q
    ||||||||| |||||||||||||||||| |||||    
T  33902240 ataatttataatttaattccatttttcgaatatt 33902207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 24211434 - 24211326
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 234  Q
    |||||||||| ||||||| ||||||||||||||||||| || ||||||||||  |||||||  |||| | ||||| |||| |||||||||||||||||||    
T  24211434 gttaagaaatcaaagatagaaatattttgttggaaattgtgtattcaatattcaagaaattggaaatctaatcttttcaaaacataatttatgatttaat 24211335  T
Q  235 tccattttt 243  Q
    || ||||||    
T  24211334 tctattttt 24211326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 243
Target Start/End: Original strand, 46603696 - 46603832
Alignment:
Q  105 gaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttt 204  Q
    ||||||||||||| || ||| || ||||| ||||||||| |||||||| |||  |||| ||||||||| ||||||  || ||||||||||||||||| ||    
T  46603696 gaaatgctaacttgtgcccttaaggcaaaagttaagaaactaaagatagaaactttttattggaaattgtgcatttcatgttttagaaatttaaaatctt 46603795  T
Q  205 atcttatcaagacataatttatgatttaattccattttt 243  Q
    ||||| |||||||  |||||||  |||||||||||||||    
T  46603796 atcttttcaagac--aatttatattttaattccattttt 46603832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 9603484 - 9603577
Alignment:
Q  150 ataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 243  Q
    ||||||||||||| ||| ||||||||||||  || ||||||||||||||||| ||||||| |||| |||  ||||||| |||||||| ||||||    
T  9603484 ataaaaatattttattgaaaattatgcatttcatgttttagaaatttaaaatcttatcttttcaaaacaatatttatgttttaattctattttt 9603577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 9831055 - 9831148
Alignment:
Q  150 ataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 243  Q
    ||||||||||||| ||| ||||||||||||  || ||||||||||||||||| ||||||| |||| |||  ||||||| |||||||| ||||||    
T  9831055 ataaaaatattttattgaaaattatgcatttcatgttttagaaatttaaaatcttatcttttcaaaacaatatttatgttttaattctattttt 9831148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 4040862 - 4040948
Alignment:
Q  150 ataaaaatattttgttggaaattatgcattcaat----attttagaaatttaaaattttatcttatcaagacataatttatgattta 232  Q
    ||||||| ||||||||||||||| ||||||||||    ||| ||||| |||||||| ||||||| |||||||| |||||||||||||    
T  4040862 ataaaaacattttgttggaaattgtgcattcaatcaatattctagaattttaaaatattatcttttcaagacaaaatttatgattta 4040948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 45996484 - 45996544
Alignment:
Q  146 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttat 206  Q
    ||||||||||||||||| ||| ||||| || ||| |||||| || ||||||||||||||||    
T  45996484 aaagataaaaatattttattgtaaattgtgtatttaatattctaaaaatttaaaattttat 45996544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 3399479 - 3399435
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcatt 179  Q
    |||||||||||||| |||||| | |||||||||||||| ||||||    
T  3399479 gttaagaaattaaatataaaagttttttgttggaaattttgcatt 3399435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 30003801 - 30003873
Alignment:
Q  164 ttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattc 236  Q
    |||||||||||| ||||||||| ||| ||| ||||||  |||| || |||| ||| |||||||| ||||||||    
T  30003801 ttggaaattatgtattcaatatcttaaaaagttaaaaacttattttttcaatacaaaatttatgttttaattc 30003873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 243
Target Start/End: Original strand, 13360 - 13498
Alignment:
Q  105 gaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttt 204  Q
    |||||| |||||| ||| || || ||| | |||||||||  ||||||| ||| ||||||||||||||| ||||||||||||| |||||||||||||| ||    
T  13360 gaaatgttaacttgtgttctcaaggcacaagttaagaaagcaaagatagaaacattttgttggaaattgtgcattcaatattctagaaatttaaaatctt 13459  T
Q  205 atcttatcaagacataatttatgatttaattccattttt 243  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  13460 atcttttcaagacataatttatgatttaattgcattttt 13498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 243
Target Start/End: Complemental strand, 25267168 - 25267030
Alignment:
Q  105 gaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttt 204  Q
    |||||| |||||| || ||| |||||| | |||||||||  ||||||| ||| ||||||||||||||| ||||||| ||||| |||||||||||||| ||    
T  25267168 gaaatgttaacttctgccctcaaagcataagttaagaaaccaaagatagaaacattttgttggaaattgtgcattcgatattatagaaatttaaaatctt 25267069  T
Q  205 atcttatcaagacataatttatgatttaattccattttt 243  Q
    ||| | |||||||||||||||||||||||||||||||||    
T  25267068 atcatttcaagacataatttatgatttaattccattttt 25267030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 2233978 - 2233868
Alignment:
Q  133 aggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgattta 232  Q
    ||||||| |||  |||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| ||| |||||||||||||    
T  2233978 aggttaaaaaaccaaagataaaagtattttgttggaaattatgcattcaatattctaaaaatttaaaattttatcttttcaaaacaaaatttatgattta 2233879  T
Q  233 attccattttt 243  Q
    |||| ||||||    
T  2233878 attctattttt 2233868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 32162764 - 32162870
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 234  Q
    |||||||||| ||| ||||||| |||||||| ||| || || || ||||||||||||||| |||||| |||| || |||| | | |||||||||||||||    
T  32162764 gttaagaaatcaaaaataaaaacattttgttcgaa-ttgtgtat-caatattttagaaatgtaaaatcttatattttcaaaataaaatttatgatttaat 32162861  T
Q  235 tccattttt 243  Q
    |||||||||    
T  32162862 tccattttt 32162870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 243
Target Start/End: Original strand, 39907939 - 39908046
Alignment:
Q  136 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 235  Q
    |||| ||| |||||||| ||||||||| | | | ||||||||||  |||||||||||||||||||| ||||||| | || | | |||||||| |||||||    
T  39907939 ttaaaaaactaaagatataaatattttatagaatattatgcatttcatattttagaaatttaaaatgttatctttttaaaataaaatttatgttttaatt 39908038  T
Q  236 ccattttt 243  Q
     |||||||    
T  39908039 tcattttt 39908046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 17072689 - 17072750
Alignment:
Q  136 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaattta 197  Q
    ||||||||| |||||||||||||||||||||   ||| ||||||||||||| ||||||||||    
T  17072689 ttaagaaatcaaagataaaaatattttgttgtggattgtgcattcaatattctagaaattta 17072750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 17575582 - 17575521
Alignment:
Q  136 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaattta 197  Q
    ||||||||| |||||||||||||||||||||   ||| ||||||||||||| ||||||||||    
T  17575582 ttaagaaatcaaagataaaaatattttgttgtggattgtgcattcaatattctagaaattta 17575521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 41242316 - 41242179
Alignment:
Q  106 aaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttta 205  Q
    ||||| ||||||||| ||| || ||| | |||||||||  ||||||||||| ||||||||||||||| |||||| |||||||||||||||| |||| |||    
T  41242316 aaatgttaacttatgccctcaaggcacaagttaagaaaccaaagataaaaacattttgttggaaattgtgcatttaatattttagaaatttgaaatctta 41242217  T
Q  206 tcttatcaagacataatttatgatttaattccattttt 243  Q
    |||| ||| |||||||||||||||||||||| ||||||    
T  41242216 tcttttcaggacataatttatgatttaattctattttt 41242179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 16041133 - 16041230
Alignment:
Q  146 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 243  Q
    ||||||| ||| |||||| |||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  16041133 aaagatagaaacattttgatggaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacataatttatgatttaattccattttt 16041230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 16053073 - 16053170
Alignment:
Q  146 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 243  Q
    ||||||| ||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  16053073 aaagatagaaacattttgttggaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacataatttatgatttaattccaatttt 16053170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 243
Target Start/End: Complemental strand, 11077076 - 11076939
Alignment:
Q  105 gaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttt 204  Q
    ||||||||||||| |||| | || ||| | |||||||||| ||||||| ||| |||| |||||||||| |||| ||||||||||||||||||||||| ||    
T  11077076 gaaatgctaacttgtgtcgttaaggcacaagttaagaaatcaaagatagaaacattt-gttggaaattgtgcaatcaatattttagaaatttaaaatctt 11076978  T
Q  205 atcttatcaagacataatttatgatttaattccattttt 243  Q
    || || |||||||| |||||||| |||||||||||||||    
T  11076977 atattttcaagacaaaatttatgttttaattccattttt 11076939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 16037577 - 16037674
Alignment:
Q  146 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 243  Q
    ||||||| ||| |||||| |||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  16037577 aaagatagaaacattttgatggaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacataatttgtgatttaattccattttt 16037674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 17517988 - 17517888
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 234  Q
    |||||||||| ||||||| |||||||||||| |||||| ||||||||||||| || ||||||||| | ||||||| |||||| |||||||||||||||||    
T  17517988 gttaagaaatcaaagatagaaatattttgttagaaattgtgcattcaatattctaaaaatttaaattcttatcttttcaagatataatttatgatttaat 17517889  T
Q  235 t 235  Q
    |    
T  17517888 t 17517888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 37820924 - 37820798
Alignment:
Q  106 aaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttta 205  Q
    ||||| ||||||||| ||| ||| || | ||||| ||| |||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||    
T  37820924 aaatgttaacttatgcccttaaaacacaagttaataaactaaatataaaaatattttattggaaattatgcattccatgttttagaaatttaaaatctta 37820825  T
Q  206 tcttatcaagacataatttatgattta 232  Q
    |||| | ||||||  ||||||| ||||    
T  37820824 tctttttaagacaatatttatgtttta 37820798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 39933347 - 39933443
Alignment:
Q  146 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 243  Q
    |||||||||||  |||||||| ||||| ||||||||||||| || |||||| |||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  39933347 aaagataaaaaatttttgttgaaaattgtgcattcaatattctaaaaattt-aaattttatcttttcaaaacacaatttatgatttaattctattttt 39933443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 9821102 - 9821003
Alignment:
Q  141 aaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccatt 240  Q
    |||||||||||| |||||||||||| |||||| ||||||||| ||| |  |||||| |||| ||||||| |||| ||||||||||| ||| |||||||||    
T  9821102 aaattaaagatagaaatattttgttagaaattgtgcattcaagattctgaaaattttaaatcttatcttttcaaaacataatttataattcaattccatt 9821003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 28389387 - 28389501
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttag------aaatttaaaattttatcttatcaagacataatttatga 228  Q
    |||||||||  ||||||||||||||||||||||||||| | |||| ||| || |||      ||||||||||| ||||||| |||||| |||||||||||    
T  28389387 gttaagaaaccaaagataaaaatattttgttggaaattgtacatttaatgttctagtcctataaatttaaaatattatcttttcaagatataatttatga 28389486  T
Q  229 tttaattccattttt 243  Q
    |||||||| ||||||    
T  28389487 tttaattctattttt 28389501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 243
Target Start/End: Complemental strand, 31229866 - 31229723
Alignment:
Q  100 aatgagaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaa 199  Q
    |||| |||||| ||| || || ||| |||||| | ||||||| |||| | ||| ||| ||||| ||||||||| | ||||| || |||||||||||||||    
T  31229866 aatgggaaatgttaatttgtgcccttaaagcataagttaagagattacatatagaaacattttattggaaattgtacattctatgttttagaaatttaaa 31229767  T
Q  200 attttatcttatcaagacataatttatgatttaattccattttt 243  Q
    || ||||  | |||||| |||||||||| |||| ||| ||||||    
T  31229766 atcttatgatttcaagatataatttatgttttacttctattttt 31229723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 5050697 - 5050593
Alignment:
Q  139 agaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattcca 238  Q
    |||| ||||| ||| ||||||||| ||  ||||| |||||||||||| ||| |||||||||||||| |||| |||| ||| || |||   ||||||||||    
T  5050697 agaagttaaacatagaaatattttcttaaaaattgtgcattcaatatattaaaaatttaaaattttgtcttttcaatacaaaagttacattttaattcca 5050598  T
Q  239 ttttt 243  Q
    |||||    
T  5050597 ttttt 5050593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 34730826 - 34730789
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaatt 172  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  34730826 gttaagaaactaaagataaaaatattttgttggaaatt 34730789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 50744820 - 50744732
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatt 223  Q
    ||||||||| |||||||| ||||||||| ||  ||||| ||||||  |||||||| ||||||||||| ||| ||| || ||||| ||||    
T  50744820 gttaagaaactaaagatataaatattttattaaaaattgtgcatttcatattttaaaaatttaaaatcttaacttctctagacaaaatt 50744732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 34870172 - 34870135
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaatt 172  Q
    |||||||||  |||||||||||||||||||||||||||    
T  34870172 gttaagaaaccaaagataaaaatattttgttggaaatt 34870135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 6276753 - 6276809
Alignment:
Q  188 tagaaatttaaaattttatcttatcaagacataatttatgatttaattccatttttc 244  Q
    ||||||||| |||| |||| || |||||||||||||||| ||||||||  |||||||    
T  6276753 tagaaattttaaatcttatattttcaagacataatttataatttaattatatttttc 6276809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 12185815 - 12185707
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 234  Q
    ||||||||| |||| ||| ||||||||||||| ||||| ||||||||||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  12185815 gttaagaaactaaaaatagaaatattttgttgaaaattgtgcattcaatattctagaaattcaaaatcttatcttttcaagacataatttatgatttaat 12185716  T
Q  235 tccattttt 243  Q
    |||||||||    
T  12185715 tccattttt 12185707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 9456316 - 9456209
Alignment:
Q  136 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 235  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||||| | |||||||||||||| |||| || |||||||||||||||| ||||||||    
T  9456316 ttaagaaatcaaagatagaaatattttgttggaaattgtgcattcaatagtctagaaatttaaaatcttatattttcaagacataatttataatttaatt 9456217  T
Q  236 ccattttt 243  Q
    ||||||||    
T  9456216 ccattttt 9456209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 3441326 - 3441218
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 234  Q
    ||||| |||||||||||| ||| ||||| | ||||||| ||||||  ||||||||||| |||||||| |||| || |||||| | |||||||| ||||||    
T  3441326 gttaaaaaattaaagatagaaacattttataggaaattgtgcatttcatattttagaactttaaaatcttatattttcaagataaaatttatgttttaat 3441227  T
Q  235 tccattttt 243  Q
    | |||||||    
T  3441226 ttcattttt 3441218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 10068183 - 10068289
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 234  Q
    ||||||||| |||| ||| ||||||||| |||||  || ||||||  || ||||||||||||||||||||||  | |||||||| |||||||| ||||||    
T  10068183 gttaagaaactaaatatagaaatattttattgga--ttgtgcatttcatgttttagaaatttaaaattttattctgtcaagacaaaatttatgttttaat 10068280  T
Q  235 tccattttt 243  Q
    | |||||||    
T  10068281 ttcattttt 10068289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 25070494 - 25070402
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatg 227  Q
    ||||| ||| |||||||| ||| ||||| ||  ||||| || |||  |||||||||||||||||||| ||||||| | |||||| ||||||||    
T  25070494 gttaaaaaactaaagatataaacattttattaaaaattgtgtatttcatattttagaaatttaaaatcttatcttttgaagacaaaatttatg 25070402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 10483464 - 10483415
Alignment:
Q  195 ttaaaattttatcttatcaagacataatttatgatttaattccatttttc 244  Q
    ||||||| |||| || |||||||| |||||||| ||||||||||||||||    
T  10483464 ttaaaatcttatattttcaagacaaaatttatgttttaattccatttttc 10483415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 3067713 - 3067606
Alignment:
Q  136 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 235  Q
    ||||||||  ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  3067713 ttaagaaaccaaagatagaaacattttgttggaaattgtgcattcaatattttagaaatttaaaatcttatcttttcaagaaataatttatgatttaatt 3067614  T
Q  236 ccattttt 243  Q
     |||||||    
T  3067613 tcattttt 3067606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 243
Target Start/End: Original strand, 5050426 - 5050533
Alignment:
Q  136 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 235  Q
    ||||||||  ||||||||||| ||||| ||| ||||| |||||| ||||||||||||||||||||| ||||||| |  || |||||||||||||||||||    
T  5050426 ttaagaaaccaaagataaaaacattttattgaaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgaggcataatttatgatttaatt 5050525  T
Q  236 ccattttt 243  Q
    | ||||||    
T  5050526 ctattttt 5050533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 4059206 - 4059118
Alignment:
Q  147 aagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 235  Q
    |||||||||| ||||| || |||||| || |||  |||||||||||||||||||||||||||| |||||||| |||||||| |||||||    
T  4059206 aagataaaaacattttattagaaattgtgtattttatattttagaaatttaaaattttatcttttcaagacaaaatttatgttttaatt 4059118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 31040283 - 31040356
Alignment:
Q  137 taagaaattaaagataaaaatattttgttggaaattatgcat-tcaatattttagaaatttaaaattttatctt 209  Q
    |||||||||||| ||||||||||||| ||||||||||||||| | ||| ||||||||||||||||| |||||||    
T  31040283 taagaaattaaatataaaaatattttattggaaattatgcatattaatgttttagaaatttaaaatcttatctt 31040356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 43968077 - 43967986
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttat 226  Q
    |||||||||  ||||||| ||| ||||||||| ||||| |||||| |||||| || |||||| |||| ||||||| ||||||||||||||||    
T  43968077 gttaagaaaccaaagatagaaacattttgttgaaaattgtgcatttaatattctaaaaattttaaatcttatcttttcaagacataatttat 43967986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 18371146 - 18371248
Alignment:
Q  141 aaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccatt 240  Q
    |||||||||||| ||||||||| | ||||||| ||||||| ||||||||||| |||||||| |||| || | |||| | |||||||  ||||||||| ||    
T  18371146 aaattaaagatagaaatattttataggaaattgtgcattctatattttagaactttaaaatcttatatttttaagataaaatttatattttaattccttt 18371245  T
Q  241 ttt 243  Q
    |||    
T  18371246 ttt 18371248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 36622186 - 36622116
Alignment:
Q  139 agaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatctt 209  Q
    ||||| |||| ||| ||| ||||| ||||||||| |||||||||||| ||| |||||||||||||||||||    
T  36622186 agaaagtaaacatataaacatttttttggaaattgtgcattcaatatattaaaaatttaaaattttatctt 36622116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 45891795 - 45891904
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatc-aagacataatttatgatttaa 233  Q
    |||||||||  |||| || ||| ||||||||||| ||| |||||||||| |  || ||||||||||| |||| || || |||||| || |||||||||||    
T  45891795 gttaagaaaccaaagttagaaacattttgttggagattgtgcattcaatgtcctaaaaatttaaaatcttattttttcaaagacaaaaattatgatttaa 45891894  T
Q  234 ttccattttt 243  Q
    ||| ||||||    
T  45891895 ttctattttt 45891904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 25808592 - 25808484
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 234  Q
    |||||||||  |||||||||||||||||||| |||||| || ||||||||||||| ||||||||||||||||||| | ||||||  ||||||||||||||    
T  25808592 gttaagaaaccaaagataaaaatattttgttagaaattgtgtattcaatattttaaaaatttaaaattttatcttttgaagacaacatttatgatttaat 25808493  T
Q  235 tccattttt 243  Q
    |||||||||    
T  25808492 tccattttt 25808484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 243
Target Start/End: Original strand, 46298512 - 46298648
Alignment:
Q  107 aatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttat 206  Q
    |||||||||||||||||| ||  || | |||||||||  ||||||||||| ||||||||||||||| |  |||||||||| |||||||||||||| ||||    
T  46298512 aatgctaacttatgtccttaagacacaagttaagaaaccaaagataaaaacattttgttggaaattgtatattcaatattatagaaatttaaaatcttat 46298611  T
Q  207 cttatcaagacataatttatgatttaattccattttt 243  Q
    ||| ||||||||  ||||||| |||||||| ||||||    
T  46298612 cttttcaagacaacatttatgttttaattctattttt 46298648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 31501162 - 31501054
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 234  Q
    ||||| |||| ||||||| ||| || |||||||||||| |||||| ||| || |||||||||||||| ||||||| |||| ||| || ||||||||||||    
T  31501162 gttaaaaaatcaaagatagaaacatattgttggaaattgtgcatttaatgttctagaaatttaaaatcttatcttttcaaaacaaaaattatgatttaat 31501063  T
Q  235 tccattttt 243  Q
    | |||||||    
T  31501062 ttcattttt 31501054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 19339915 - 19339997
Alignment:
Q  136 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagaca 218  Q
    ||||||||  ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||| | ||||||| ||||||||    
T  19339915 ttaagaaaccaaagatataaacattttgttggaaattgtgcattcaatattttagaactttaaagtcttatcttttcaagaca 19339997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 242
Target Start/End: Original strand, 49423341 - 49423448
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 234  Q
    ||||| |||||||| ||||||||||||| ||| ||||| ||||||  || ||||| ||||||||||| ||||||| | |||| |  ||||||| ||||||    
T  49423341 gttaataaattaaacataaaaatattttattgaaaattgtgcatttcatgttttaaaaatttaaaatcttatctttttaagataatatttatgttttaat 49423440  T
Q  235 tccatttt 242  Q
    || |||||    
T  49423441 tctatttt 49423448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 23392823 - 23392714
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaattt-aaaattttatcttatcaagacataatttatgatttaa 233  Q
    |||||||||||||| ||  ||||||||| ||  ||||| |||||| ||||||||| || ||| ||||| |||| || | |||| | |||||||  |||||    
T  23392823 gttaagaaattaaaaattgaaatattttatttaaaattgtgcatttaatattttaaaattttaaaaatcttatatttttaagataaaatttattttttaa 23392724  T
Q  234 ttccattttt 243  Q
    ||||||||||    
T  23392723 ttccattttt 23392714  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 51540737 - 51540817
Alignment:
Q  164 ttggaaattatgcattcaatattttagaaa-tttaaaattttatcttatcaagacataatttatgatttaattccattttt 243  Q
    ||||||||| || ||||| ||||||| ||| ||||||||||||| || | ||| || || ||||| |||||||||||||||    
T  51540737 ttggaaattgtgtattcattattttaaaaagtttaaaattttattttgttaagtcaaaacttatgttttaattccattttt 51540817  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 2126287 - 2126184
Alignment:
Q  140 gaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccat 239  Q
    |||| |||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||  |||| || ||||||||| |||||||||||||||||||    
T  2126287 gaaactaaagatagaaatattttgttggaaattgtgcattcaatattttaaaaatttaaaaacttatattttcaagacatgatttatgatttaattccat 2126188  T
Q  240 tttt 243  Q
    ||||    
T  2126187 tttt 2126184  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 11152190 - 11152279
Alignment:
Q  136 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataattta 225  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||    
T  11152190 ttaagaaatcaaagatgaaaatattttgttggaaattgtgcattcaatattctagaaatttaaaatcttatcttctcaagacataattta 11152279  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 22348792 - 22348730
Alignment:
Q  138 aagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaa 200  Q
    |||||| |||| ||||||||||||| ||| ||||| |||||||||||||||| || |||||||    
T  22348792 aagaaactaaatataaaaatattttcttgaaaattgtgcattcaatattttaaaagtttaaaa 22348730  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 22345757 - 22345686
Alignment:
Q  138 aagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatctt 209  Q
    ||||||||||| ||  || |||||| || |||||| |||||||||||||||| | |||||||| ||||||||    
T  22345757 aagaaattaaatatttaagtattttctttgaaattgtgcattcaatattttaaacatttaaaaatttatctt 22345686  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 35075847 - 35075954
Alignment:
Q  137 taagaaattaaagataaaaatatttt-gttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 235  Q
    ||||||| |||||||| ||| ||||| |||| ||||| ||||||||||||| |||||||||||||| ||||||| |||||||| || |||||||||||||    
T  35075847 taagaaactaaagatataaacatttttgttgaaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacaaaaattatgatttaatt 35075946  T
Q  236 ccattttt 243  Q
    | ||||||    
T  35075947 ctattttt 35075954  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 31559181 - 31559096
Alignment:
Q  146 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgattt 231  Q
    ||||||| ||| ||||||||||| ||| |||||| | |||||||| ||||||||||||||| || |||||||||||||||| ||||    
T  31559181 aaagatagaaacattttgttggacattgtgcatttagtattttagcaatttaaaattttatgttttcaagacataatttattattt 31559096  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 5150835 - 5150888
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatatttt 188  Q
    ||||||||  ||||||| |||||||||| ||| |||||||||||||||||||||    
T  5150835 gttaagaagctaaagattaaaatattttcttgaaaattatgcattcaatatttt 5150888  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 242
Target Start/End: Original strand, 10020725 - 10020829
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 234  Q
    ||||| |||||||| ||| ||||||||||   |||||  | ||||| || |||||||||||||||| ||||| || ||||||||  |||| || ||||||    
T  10020725 gttaataaattaaatatagaaatattttg---gaaatcgttcattctatgttttagaaatttaaaaatttatattttcaagacaatatttttgttttaat 10020821  T
Q  235 tccatttt 242  Q
    ||||||||    
T  10020822 tccatttt 10020829  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 7802030 - 7802090
Alignment:
Q  182 atattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 243  Q
    |||||||||||||||||||||||||||| | |||||| |||||    |||||||||||||||    
T  7802030 atattttagaaatttaaaattttatctt-ttaagacaaaatttgcattttaattccattttt 7802090  T

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Target: scaffold0402 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 2978 - 3060
Alignment:
Q  136 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagaca 218  Q
    ||||||||  ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||| | ||||||| ||||||||    
T  2978 ttaagaaaccaaagatataaacattttgttggaaattgtgcattcaatattttagaactttaaagtcttatcttttcaagaca 3060  T

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Target: scaffold1786 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 365 - 473
Alignment:
Q  135 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 234  Q
    ||||||| |||||| ||  ||||||||||||  ||||| |||||| ||||||||| || |||||||| |||| || | |||| | |||||||  ||||||    
T  365 gttaagatattaaaaattgaaatattttgttcaaaattgtgcatttaatattttaaaattttaaaatcttatatttttaagataaaatttattttttaat 464  T
Q  235 tccattttt 243  Q
    | |||||||    
T  465 ttcattttt 473  T

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