View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_38 (Length: 262)
Name: NF19001_low_38
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 41222255 - 41222004
Alignment:
| Q |
2 |
aacaagaccattaaggtaatcaagatcattagagaatttatactatactata----------attaacaaagtttgattagaaagagaagagtctgaatg |
91 |
Q |
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| T |
41222255 |
aacaagaccattaaggtaatcaagatcattagagaatttatactatactatactatactataattaacaaagtttgattagaaagagaagagtctgaatg |
41222156 |
T |
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| Q |
92 |
tgttgtttttatagtatgcatgtcgaaagacactagcagacaatcgaccacgcgtacgtggcaggtttgcacgtaatgacgagcccacagagattcctaa |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41222155 |
tgttgtttttatagtatgcatgtcgaaagacactagcagacaatcgaccacgcgtacgtggcaggtttgcacgcaatgacgagcccacagagattcctaa |
41222056 |
T |
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| Q |
192 |
ggctccatgtttaatcagagatgaagacgaagtcgatttctgggtaaatatt |
243 |
Q |
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| T |
41222055 |
ggctccatgtttaatcagagatgaagacgaagtcgatttctgggtaaatatt |
41222004 |
T |
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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 2637053 - 2637116
Alignment:
| Q |
104 |
agtatgcatgtcgaaagacactagcagacaatcgaccacgcgtacgtggcaggtttgcacgtaa |
167 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||| |||||||||| || |||||||| |
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| T |
2637053 |
agtatgcatgccgaaagacactagcagacaatcgaacacgcatacgtggcagattcgcacgtaa |
2637116 |
T |
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