View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19001_low_4 (Length: 706)

Name: NF19001_low_4
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19001_low_4
NF19001_low_4
[»] chr8 (1 HSPs)
chr8 (24-694)||(4632813-4633472)
[»] chr2 (1 HSPs)
chr2 (551-633)||(10168994-10169076)
[»] chr3 (4 HSPs)
chr3 (56-141)||(50807888-50807974)
chr3 (56-141)||(50867904-50867990)
chr3 (128-165)||(50807626-50807663)
chr3 (128-165)||(50868214-50868251)
[»] chr7 (3 HSPs)
chr7 (56-141)||(19055458-19055544)
chr7 (128-165)||(19055770-19055807)
chr7 (652-694)||(27590929-27590971)
[»] chr1 (2 HSPs)
chr1 (417-495)||(678890-678967)
chr1 (479-527)||(12534275-12534323)


Alignment Details
Target: chr8 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 24 - 694
Target Start/End: Complemental strand, 4633472 - 4632813
Alignment:
Q  24 aacaaccttcaccattgatgtgaaatacactattgaaaccactcacagtcatgttttgttcaaatgcacaatttatttggatgaactacacttatcatga 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4633472 aacaaccttcaccattgatgtgaaatacactattgaaaccactcacagtcatgttttgttcaaatgcacaatttatttggatgaactacgcttatcatga 4633373  T
Q  124 tatcagatttgattttttcttcctttgtgcatatttagaagggttgttaagttcttggtcagttgagctacattttgccgctctgttgttctaactatat 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  4633372 tatcagatttgattttttcttcctttgtgcatatttagaagggttgttaagttcttggtcagtggagctacattttgccgctctgttgttctatctatat 4633273  T
Q  224 ggttaaatatgaattgcttaggaggtaattcagggacagaaccatatttgaatacagctgctataaaattgtacaagaccaaatatctagactatgatac 323  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4633272 ggttaaatatgaattgcttaggaggtgattcagggacagaaccatatttgaatacagctgctataaaattgtacaagaccaaatatctagactatgatac 4633173  T
Q  324 tattatggtgagtttggtttgagtattgttttggtgaaatcttatatttttagctattcttaacgtttcatgaggttaaacttgacattggtctatgata 423  Q
    ||||||||||||||||||||           ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4633172 tattatggtgagtttggttt-----------tggtgaaatcttataattttagctattcttaacgttttatgaggttaaacttgacattggtctatgata 4633084  T
Q  424 aagtttcctcttaaaactcatggttttatgggaatatggttgtggactaaatgtaaatagatgcatcaaattatttagcaaatttagagtcaaatgatta 523  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4633083 aagtttcctcttaaaactcatggttttatgggaatatgtttgtggactaaatgtaaatagatgcatcaaattatttagcaaatttagagtcaaatgatta 4632984  T
Q  524 agaagcaaatttggagctttagcagaacatatatgacatagagaagttgattggctgcaatatcttctacttttccttatttgctttcttgaataatatt 623  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  4632983 agaagcaaatttggagctttagcggaacatatatgacatagagaagttgattggctgaaatatcttccacttttccttatttgctttcttgaataatatt 4632884  T
Q  624 tttgttgtatcttcatagtttggctgattagtgatgacgacaaatgtgatcaagtttccttattatttgat 694  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4632883 tttgttgtatcttcatagtttggctgattagtgatgacgacaaatgtgatcaagtttccttattatttgat 4632813  T

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Target: chr2 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 551 - 633
Target Start/End: Original strand, 10168994 - 10169076
Alignment:
Q  551 catatatgacatagagaagttgattggctgcaatatcttctacttttccttatttgctttcttgaataatatttttgttgtat 633  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  10168994 catatatgacatagagaagttgattggctgcaatatcttctaattttccttatttgtttttttgaataatatttttgttgtat 10169076  T

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Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 50807974 - 50807888
Alignment:
Q  56 ttgaaaccactcacagtcatgttttgttcaaatgcacaatttatttggatgaactacact-tatcatgatatcagatttgatttttt 141  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||    
T  50807974 ttgaaaccactcacaatcatattttgttcaaatgcacaatttatttggatgaactacgctatatcatgatatcagatttgaattttt 50807888  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 50867904 - 50867990
Alignment:
Q  56 ttgaaaccactcacagtcatgttttgttcaaatgcacaatttatttggatgaactacact-tatcatgatatcagatttgatttttt 141  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| |||||    
T  50867904 ttgaaaccactcacaatcatattttgttcaaatgcacaatttatttgtatgaactacgctatatcatgatatcagatttgaattttt 50867990  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 50807663 - 50807626
Alignment:
Q  128 agatttgattttttcttcctttgtgcatatttagaagg 165  Q
    ||||||||||||||||||||||||||||||||||||||    
T  50807663 agatttgattttttcttcctttgtgcatatttagaagg 50807626  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 50868214 - 50868251
Alignment:
Q  128 agatttgattttttcttcctttgtgcatatttagaagg 165  Q
    ||||||||||||||||||||||||||||||||||||||    
T  50868214 agatttgattttttcttcctttgtgcatatttagaagg 50868251  T

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Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 19055458 - 19055544
Alignment:
Q  56 ttgaaaccactcacagtcatgttttgttcaaatgcacaatttatttggatgaactacact-tatcatgatatcagatttgatttttt 141  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| |||||    
T  19055458 ttgaaaccactcacaatcatattttgttcaaatgcacaatttatttgtatgaactacgctatatcatgatatcagatttgaattttt 19055544  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 19055770 - 19055807
Alignment:
Q  128 agatttgattttttcttcctttgtgcatatttagaagg 165  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19055770 agatttgattttttcttcctttgtgcatatttagaagg 19055807  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 652 - 694
Target Start/End: Complemental strand, 27590971 - 27590929
Alignment:
Q  652 tagtgatgacgacaaatgtgatcaagtttccttattatttgat 694  Q
    ||||| ||||||||||||||||||||  |||||||||||||||    
T  27590971 tagtggtgacgacaaatgtgatcaaggctccttattatttgat 27590929  T

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Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 417 - 495
Target Start/End: Complemental strand, 678967 - 678890
Alignment:
Q  417 tatgataaagtttcctcttaaaactcatggttttatgggaatatggttgtggactaaa-tgtaaatagatgcatcaaatt 495  Q
    |||||||||| |||  ||||||||||||||||| |||  ||| |||||||   ||||| |||||||||||||||||||||    
T  678967 tatgataaagattcaccttaaaactcatggtttaatgacaatttggttgt--tctaaagtgtaaatagatgcatcaaatt 678890  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 479 - 527
Target Start/End: Original strand, 12534275 - 12534323
Alignment:
Q  479 aatagatgcatcaaattatttagcaaatttagagtcaaatgattaagaa 527  Q
    |||||||||||||||||  |  |||||||||||||||||| ||||||||    
T  12534275 aatagatgcatcaaattgctaggcaaatttagagtcaaataattaagaa 12534323  T

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