View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19001_low_40 (Length: 247)
Name: NF19001_low_40
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_40 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 41222313 - 41222445
Alignment:
| Q |
53 |
cgcactataacgacctactttgaaattttgttcctcttgcaaattcccctctgttggagacatattattttctttcatgttctgtttcaaagactaaaca |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41222313 |
cgcactataacgacctactttgaaattttgttcctcttgcaaattcccctctgttggagacatattattttctttcatgttctgtttcaaagactaaaca |
41222412 |
T |
|
| Q |
153 |
aacttcaataaaatcaactttggaaaaatgaag |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
41222413 |
aacttcaataaaatcaactttggaaaaatgaag |
41222445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41222261 - 41222293
Alignment:
| Q |
1 |
tcctctgtgttctcttagctctgtacttggaaa |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
41222261 |
tcctctgtgttctcttagctctgtacttggaaa |
41222293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University