View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_41 (Length: 247)
Name: NF19001_low_41
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 39670205 - 39670031
Alignment:
| Q |
2 |
ttaataaaatggataatccatgcacaaacaaatccattcacataagcacttagaaaattaattaatatagttctattttgataaaccatacaaattttat |
101 |
Q |
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| T |
39670205 |
ttaataaaatggataatccatgcacaaacaaatccattcacataagcacttagaaaattaattaatatagttctattttgataaaccatacaaattttat |
39670106 |
T |
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| Q |
102 |
ctataacttcccatattctggtcactatttcaatctcaatgcaaaattattattatcagggtcatgcctccaagattt |
179 |
Q |
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| T |
39670105 |
ct---acttcccatattctggtcactatttcaatctcaatgcaaaattattattatcagggtcatgcctccaagattt |
39670031 |
T |
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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 39665074 - 39665013
Alignment:
| Q |
177 |
tttattcaaaaggagtaaagctaattttattcacacaaataataacaaccatgaattctctg |
238 |
Q |
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| T |
39665074 |
tttattcaaaaggagtaaagctaattttattcacacaaataataacaaccacgaattctctg |
39665013 |
T |
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