View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_44 (Length: 236)
Name: NF19001_low_44
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8957658 - 8957437
Alignment:
| Q |
1 |
aaaatgttcctatataacgtgacaaccccgtgattgtgttaccatttccaagtgtaagggtcccatgaaattctctatccatagttccagcagccacagt |
100 |
Q |
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| T |
8957658 |
aaaatgttcctatataacgtgacaaccccgtgattgtgttaccatttccaagtgtaagggtcccttgaaattctctatccatagttccagcagccacagt |
8957559 |
T |
|
| Q |
101 |
tatgacccaaggtgttccattgtgaagagtttcaagggcaggaccattattaccagctgaagtggaaacaaaaacacctttttccatagctgcaaatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8957558 |
tatgacccaaggtgttccattgtgaagagtttcaagggcaggaccattattaccagctgaagtggaaacaaaaacacctttttccatagctgcaaatgtt |
8957459 |
T |
|
| Q |
201 |
gctatggcaacaggatcttcat |
222 |
Q |
| |
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|| |||||||||||||| |||| |
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| T |
8957458 |
gcaatggcaacaggatcgtcat |
8957437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 8962631 - 8962451
Alignment:
| Q |
42 |
ccatttccaagtgtaagggtcccatgaaattctctatccatagttccagcagccacagttatgacccaaggtgttccattgtgaagagtttcaagggcag |
141 |
Q |
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||||| ||||||||||| ||||| |||||| | ||| | ||| | |||||| |||||||| ||||| ||| |||||||||||||||| | || || || |
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| T |
8962631 |
ccattaccaagtgtaagattcccaaaaaattcacgatctaaagtactagcagcaacagttatcacccatggtattccattgtgaagagtgttaaaggaag |
8962532 |
T |
|
| Q |
142 |
gaccattattaccagctgaagtggaaacaaaaacacctttttccatagctgcaaatgttgctatggcaacaggatcttcat |
222 |
Q |
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| T |
8962531 |
gtccattattacctgctgaagtagacacaaaaacacctttttccatagctgcaaaagtggctattgcaattggatcttcat |
8962451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 222
Target Start/End: Original strand, 8946459 - 8946639
Alignment:
| Q |
42 |
ccatttccaagtgtaagggtcccatgaaattctctatccatagttccagcagccacagttatgacccaaggtgttccattgtgaagagtttcaagggcag |
141 |
Q |
| |
|
||||| ||||||||||| ||| |||||||||| | ||||||||| |||||||| |||||| | | ||| |||||||||||| ||||||||| || | | |
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| T |
8946459 |
ccattaccaagtgtaagagtcgcatgaaattcacgatccatagtaccagcagcaacagttgtcaaccatggtgttccattgcgaagagttttaaaatcgg |
8946558 |
T |
|
| Q |
142 |
gaccattattaccagctgaagtggaaacaaaaacacctttttccatagctgcaaatgttgctatggcaacaggatcttcat |
222 |
Q |
| |
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| || | |||||| |||||| || ||||||| ||||||||||||||||||||| | ||||| |||| |||||||||| |
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| T |
8946559 |
ggccgtcattacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcat |
8946639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 8974027 - 8973847
Alignment:
| Q |
42 |
ccatttccaagtgtaagggtcccatgaaattctctatccatagttccagcagccacagttatgacccaaggtgttccattgtgaagagtttcaagggcag |
141 |
Q |
| |
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||||| ||||||||||| ||||| |||| || | ||||| ||| | ||||| || ||||| ||||| ||| |||||||||||||||||| || || || |
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| T |
8974027 |
ccattaccaagtgtaagattcccacgaaactcacgatccaaagtacttgcagcaacggttattacccatggtattccattgtgaagagttttaaaggaag |
8973928 |
T |
|
| Q |
142 |
gaccattattaccagctgaagtggaaacaaaaacacctttttccatagctgcaaatgttgctatggcaacaggatcttcat |
222 |
Q |
| |
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| |||| |||||| |||||||| || |||| |||||| |||||||||||| ||| || || || || || |||||||||| |
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| T |
8973927 |
gtccatcattacctgctgaagtagacacaacaacacccctttccatagctgaaaaagtggcaattgcgactggatcttcat |
8973847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 34963185 - 34963404
Alignment:
| Q |
3 |
aatgttcctatataacgtgacaaccccgtgattgtgttaccatttccaagtgtaagggtcccatgaaattctctatccatagttccagcagccacagtta |
102 |
Q |
| |
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|||||||||| |||| | ||||| || ||||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
34963185 |
aatgttcctacataaagagacaatcctatgattttgttaccatttccaagtgtaacagtcccttgaaaatctctatccatagttccagcagccacagtta |
34963284 |
T |
|
| Q |
103 |
tgacccaaggtgttccattgtgaagagtttcaagggcaggaccattattaccagctgaagtggaaacaaaaacacctttttccatagctgcaaatgttgc |
202 |
Q |
| |
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| |||||||||||||||||||| | |||| |||||| || |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34963285 |
taacccaaggtgttccattgtgtaatgttttaagggctggtccattatttcctgctgaagtagaaacaaaaacacctttttccatagctgcaaatgttgc |
34963384 |
T |
|
| Q |
203 |
tatggcaacaggatcttcat |
222 |
Q |
| |
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||| || || | |||||||| |
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| T |
34963385 |
tatagctacggcatcttcat |
34963404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 219
Target Start/End: Original strand, 21687633 - 21687784
Alignment:
| Q |
68 |
aaattctctatccatagttccagcagccacagttatgacccaaggtgttccattgtgaagagtttcaagggcaggaccattattaccagctgaagtggaa |
167 |
Q |
| |
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|||||| | ||||| ||| |||||||| |||||||| ||||| ||| ||||||| |||| || || || | || ||||||||||| || ||||| || |
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| T |
21687633 |
aaattcacgatccaaagtaccagcagcaacagttatcacccatggtattccattatgaatagatttaaacgagggtccattattacctgcagaagtagac |
21687732 |
T |
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| Q |
168 |
acaaaaacacctttttccatagctgcaaatgttgctatggcaacaggatctt |
219 |
Q |
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||||||| |||||||||||||||||||||||| || || ||||| ||||||| |
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| T |
21687733 |
acaaaaatacctttttccatagctgcaaatgtcgcaattgcaactggatctt |
21687784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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