View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19001_low_47 (Length: 227)

Name: NF19001_low_47
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19001_low_47
NF19001_low_47
[»] scaffold0003 (1 HSPs)
scaffold0003 (2-227)||(221857-222082)
[»] chr7 (5 HSPs)
chr7 (55-219)||(47556199-47556363)
chr7 (55-219)||(22862895-22863059)
chr7 (4-142)||(20695241-20695379)
chr7 (4-142)||(20700719-20700857)
chr7 (66-224)||(12124506-12124664)
[»] chr8 (1 HSPs)
chr8 (55-219)||(10798829-10798993)
[»] chr4 (2 HSPs)
chr4 (57-226)||(17823923-17824092)
chr4 (180-224)||(15646310-15646354)
[»] scaffold0032 (2 HSPs)
scaffold0032 (4-227)||(50121-50344)
scaffold0032 (7-110)||(52936-53039)
[»] chr6 (1 HSPs)
chr6 (71-219)||(5388673-5388821)
[»] chr3 (3 HSPs)
chr3 (66-224)||(17150954-17151112)
chr3 (4-101)||(23824437-23824534)
chr3 (181-219)||(23824603-23824641)
[»] chr2 (1 HSPs)
chr2 (180-219)||(21967628-21967667)


Alignment Details
Target: scaffold0003 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 222082 - 221857
Alignment:
Q  2 catcaatgaactgattaaaaggaacatattctgcagataaggaattgtctactcgacctcttcgttcttcactagaccgaacaacattaaaatcaccaag 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  222082 catcaatgaactgattaaaaggaacatattctgcagataaggaattgtctactcgacctcttcgttcttcactagaccgaacgacattaaaatcaccaag 221983  T
Q  102 aacacaccacacaacttccccatgtaactgaatcaaattagtcaaagcaccccacaaagcatggcgaccactactatcgcaaggaccataaatatttgcc 201  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||    
T  221982 aacacaccacacagcttccccatgtaactgaatcaaattagtcaaagcaccccacaaaacctggcgaccactactatcgcaaggagcataaatatttgcc 221883  T
Q  202 aaacaaaacacttcattactttttat 227  Q
    ||||||||||||||||||||||||||    
T  221882 aaacaaaacacttcattactttttat 221857  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 219
Target Start/End: Original strand, 47556199 - 47556363
Alignment:
Q  55 cgacctcttcgttcttcactagaccgaacaacattaaaatcaccaagaacacaccacacaacttccccatgtaactgaatcaaattagtcaaagcacccc 154  Q
    |||||||||| |||  ||||||| |||||| ||||||| ||||||||||||||||||||  |||||||||||||  ||| |||||||| ||||| | |||    
T  47556199 cgacctcttctttcagcactagaacgaacatcattaaagtcaccaagaacacaccacaccgcttccccatgtaaaggaaacaaattagacaaagaatccc 47556298  T
Q  155 acaaagcatggcgaccactactatcgcaaggaccataaatatttgccaaacaaaacacttcatta 219  Q
    ||||  | || || || |||||||| |||||| |||||||||| |||||||| ||||| ||||||    
T  47556299 acaacacctgtcgccccctactatcacaaggagcataaatattcgccaaacagaacacctcatta 47556363  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 22863059 - 22862895
Alignment:
Q  55 cgacctcttcgttcttcactagaccgaacaacattaaaatcaccaagaacacaccacacaacttccccatgtaactgaatcaaattagtcaaagcacccc 154  Q
    |||||||||| |||  ||||||| |||||| |||||||||||||||||||||||||  |  |||||||||||||  ||| |||||||| ||||| | |||    
T  22863059 cgacctcttctttcagcactagaacgaacaccattaaaatcaccaagaacacaccaagccgcttccccatgtaaaggaaacaaattagacaaagaatccc 22862960  T
Q  155 acaaagcatggcgaccactactatcgcaaggaccataaatatttgccaaacaaaacacttcatta 219  Q
    ||||  | || || || |||||||| |||| | |||||||||| |||||||| ||||| ||||||    
T  22862959 acaacacctgtcgccccctactatcacaagaagcataaatattcgccaaacagaacacctcatta 22862895  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 20695379 - 20695241
Alignment:
Q  4 tcaatgaactgattaaaaggaacatattctgcagataaggaattgtctactcgacctcttcgttcttcactagaccgaacaacattaaaatcaccaagaa 103  Q
    ||||||||||||||||||||| |||| ||  || |  | ||||| ||  |||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  20695379 tcaatgaactgattaaaaggagcataatcaccataagaagaattatccgctcgccctcttctttcttcactagaccgaacgacattaaaatcaccaagaa 20695280  T
Q  104 cacaccacacaacttccccatgtaactgaatcaaattag 142  Q
     ||||||  || ||||  |||||| ||||||||||||||    
T  20695279 tacaccaagcagcttcatcatgtacctgaatcaaattag 20695241  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 20700857 - 20700719
Alignment:
Q  4 tcaatgaactgattaaaaggaacatattctgcagataaggaattgtctactcgacctcttcgttcttcactagaccgaacaacattaaaatcaccaagaa 103  Q
    ||||||||||||||||||||| |||| ||  || |  | ||||| ||  |||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  20700857 tcaatgaactgattaaaaggagcataatcaccataagaagaattatccgctcgccctcttctttcttcactagaccgaacgacattaaaatcaccaagaa 20700758  T
Q  104 cacaccacacaacttccccatgtaactgaatcaaattag 142  Q
     ||||||  || ||||  |||||| ||||||||||||||    
T  20700757 tacaccaagcagcttcatcatgtacctgaatcaaattag 20700719  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 224
Target Start/End: Original strand, 12124506 - 12124664
Alignment:
Q  66 ttcttcactagaccgaacaacattaaaatcaccaagaacacaccacacaacttccccatgtaactgaatcaaattagtcaaagcaccccacaaagcatgg 165  Q
    |||||||||||| || |||||||| || |||||||| ||||||||  | || || ||||| | |   | ||||||||  | |||  ||||||||   |||    
T  12124506 ttcttcactagaacgcacaacattgaagtcaccaagcacacaccaagctacatctccatgaaccaagaacaaattagagatagcttcccacaaaagctgg 12124605  T
Q  166 cgaccactactatcgcaaggaccataaatatttgccaaacaaaacacttcattactttt 224  Q
    || || ||| ||| ||||||| ||||||||||| |||||||||||| ||||||| ||||    
T  12124606 cgccccctattattgcaaggagcataaatatttaccaaacaaaacatttcattattttt 12124664  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 10798993 - 10798829
Alignment:
Q  55 cgacctcttcgttcttcactagaccgaacaacattaaaatcaccaagaacacaccacacaacttccccatgtaactgaatcaaattagtcaaagcacccc 154  Q
    |||||||||| |||  ||||||| |||||| ||||||| |||||||||||||||||  |  |||||||||||||  ||| |||||||| ||||| | |||    
T  10798993 cgacctcttctttcagcactagaacgaacatcattaaagtcaccaagaacacaccaagccgcttccccatgtaaaggaaacaaattagacaaagaatccc 10798894  T
Q  155 acaaagcatggcgaccactactatcgcaaggaccataaatatttgccaaacaaaacacttcatta 219  Q
    ||||  | || || || |||||||| |||||| |||||||||| |||||||  ||||| ||||||    
T  10798893 acaacacttgtcgccccctactatcacaaggagcataaatattcgccaaactgaacacctcatta 10798829  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 57 - 226
Target Start/End: Complemental strand, 17824092 - 17823923
Alignment:
Q  57 acctcttcgttcttcactagaccgaacaacattaaaatcaccaagaacacaccacacaacttccccatgtaactgaatcaaattagtcaaagcaccccac 156  Q
    |||||||| |||||||||||| ||||| |||||||| |||||||| ||||||||  | || || || |||| | ||| ||||||||  |  ||| |||||    
T  17824092 acctcttctttcttcactagaacgaacgacattaaagtcaccaagcacacaccaagctacatcaccgtgtaccagaaacaaattagagaccgcatcccac 17823993  T
Q  157 aaagcatggcgaccactactatcgcaaggaccataaatatttgccaaacaaaacacttcattacttttta 226  Q
    ||| | || || || ||| |||  |||||| |||||||||||||||||||||||| ||||||| ||||||    
T  17823992 aaaacctgacgtcccctattattacaaggagcataaatatttgccaaacaaaacatttcattatttttta 17823923  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 15646354 - 15646310
Alignment:
Q  180 gcaaggaccataaatatttgccaaacaaaacacttcattactttt 224  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||    
T  15646354 gcaaggagcataaatatttgccaaacaaaacacttcattattttt 15646310  T

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Target: scaffold0032 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 50344 - 50121
Alignment:
Q  4 tcaatgaactgattaaaaggaacatattctgcagataaggaattgtctactcgacctcttcgttcttcactagaccgaacaacattaaaatcaccaagaa 103  Q
    ||||||||||||||||||||| |||| ||  || | |||| ||| || |  || ||||||| |||||||||||| ||||| |||||||| || ||||| |    
T  50344 tcaatgaactgattaaaaggagcatagtcaacataaaaggtattttcaaaacggcctcttctttcttcactagaacgaacgacattaaagtcgccaagca 50245  T
Q  104 cacaccacacaacttccccatgtaactgaatcaaattagtcaaagcaccccacaaagcatggcgaccactactatcgcaaggaccataaatatttgccaa 203  Q
    || ||||  | || || || |||||  | | ||||||||  | |||  |||||| | | || || || ||| |||| |||||| ||||||||||||||||    
T  50244 caaaccaagccacatcaccgtgtaatagtagcaaattagagacagcgtcccacagaacctgtcgccccctattatcacaaggagcataaatatttgccaa 50145  T
Q  204 acaaaacacttcattactttttat 227  Q
    |||||||||||||||| |||||||    
T  50144 acaaaacacttcattattttttat 50121  T

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Target: scaffold0032; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 53039 - 52936
Alignment:
Q  7 atgaactgattaaaaggaacatattctgcagataaggaattgtctactcgacctcttcgttcttcactagaccgaacaacattaaaatcaccaagaacac 106  Q
    |||||||||||||||||| |||| ||  || | |||| ||| || |  || ||||||| |||||||||||| ||||| |||||||| |||||||| ||||    
T  53039 atgaactgattaaaaggagcatagtcaacataaaaggtattttcaaaacggcctcttctttcttcactagaacgaacgacattaaagtcaccaagcacac 52940  T
Q  107 acca 110  Q
    ||||    
T  52939 acca 52936  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 5388821 - 5388673
Alignment:
Q  71 cactagaccgaacaacattaaaatcaccaagaacacaccacacaacttccccatgtaactgaatcaaattagtcaaagcaccccacaaagcatggcgacc 170  Q
    ||||||| |||||| |||||||||||||||||||||||||  |  |||| ||||||||  ||| |||||||| ||||| | |||||||  | ||  | ||    
T  5388821 cactagaacgaacatcattaaaatcaccaagaacacaccaagccgcttctccatgtaatggaaacaaattagacaaagaatcccacaacacctgatgccc 5388722  T
Q  171 actactatcgcaaggaccataaatatttgccaaacaaaacacttcatta 219  Q
     ||||| || |||||| |||||| ||| |||||||| ||||| ||||||    
T  5388721 cctactgtcacaaggagcataaacattcgccaaacagaacacctcatta 5388673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 224
Target Start/End: Complemental strand, 17151112 - 17150954
Alignment:
Q  66 ttcttcactagaccgaacaacattaaaatcaccaagaacacaccacacaacttccccatgtaactgaatcaaattagtcaaagcaccccacaaagcatgg 165  Q
    |||||||||||  |||||||||||||| |||||||| ||||||||  | || || ||||| | |   | ||||||||  | |||  ||||||||   ||     
T  17151112 ttcttcactagttcgaacaacattaaagtcaccaagcacacaccaagctacatcaccatgaaccaagaacaaattagagacagcttcccacaaactctga 17151013  T
Q  166 cgaccactactatcgcaaggaccataaatatttgccaaacaaaacacttcattactttt 224  Q
    || || ||| ||| ||||||| ||||||||||| |||||||||||||||||||| ||||    
T  17151012 cgccccctaatattgcaaggagcataaatatttaccaaacaaaacacttcattattttt 17150954  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 23824437 - 23824534
Alignment:
Q  4 tcaatgaactgattaaaaggaacatattctgcagataaggaattgtctactcgacctcttcgttcttcactagaccgaacaacattaaaatcaccaag 101  Q
    |||||||||||||| |||| | |||| || |  || |||||||| || || ||||||| || ||||||||| || |||||||||||||| ||||||||    
T  23824437 tcaatgaactgattgaaagtatcatagtcagttgaaaaggaattatcaacacgacctcgtctttcttcacttgaacgaacaacattaaagtcaccaag 23824534  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 23824603 - 23824641
Alignment:
Q  181 caaggaccataaatatttgccaaacaaaacacttcatta 219  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  23824603 caaggagcatatatatttgccaaacaaaacacttcatta 23824641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 21967628 - 21967667
Alignment:
Q  180 gcaaggaccataaatatttgccaaacaaaacacttcatta 219  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  21967628 gcaaggagcataaatatttaccaaacaaaacacttcatta 21967667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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