View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19001_low_48 (Length: 226)

Name: NF19001_low_48
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19001_low_48
NF19001_low_48
[»] chr6 (35 HSPs)
chr6 (29-209)||(5398226-5398403)
chr6 (98-211)||(5156017-5156130)
chr6 (98-211)||(5372275-5372388)
chr6 (94-211)||(5177917-5178034)
chr6 (94-211)||(5279742-5279859)
chr6 (94-211)||(5688903-5689020)
chr6 (94-210)||(2939094-2939210)
chr6 (94-211)||(5180774-5180891)
chr6 (94-211)||(5351578-5351695)
chr6 (117-211)||(5334363-5334457)
chr6 (94-203)||(5242512-5242621)
chr6 (94-211)||(5346207-5346324)
chr6 (94-211)||(5439189-5439306)
chr6 (94-211)||(5098389-5098506)
chr6 (94-191)||(23127310-23127407)
chr6 (98-196)||(5100822-5100920)
chr6 (98-196)||(5135923-5136021)
chr6 (94-200)||(5256114-5256220)
chr6 (94-204)||(5448794-5448904)
chr6 (94-211)||(5065449-5065566)
chr6 (94-211)||(5126629-5126746)
chr6 (94-211)||(5352863-5352980)
chr6 (94-211)||(5427078-5427195)
chr6 (94-200)||(5283224-5283330)
chr6 (104-191)||(5072692-5072779)
chr6 (95-204)||(5253718-5253827)
chr6 (98-153)||(2657155-2657210)
chr6 (25-84)||(5242400-5242459)
chr6 (25-76)||(5352752-5352803)
chr6 (94-204)||(5124443-5124553)
chr6 (41-96)||(5155918-5155973)
chr6 (25-70)||(5439339-5439384)
chr6 (25-53)||(5100782-5100810)
chr6 (25-53)||(5135883-5135911)
chr6 (25-53)||(5351703-5351731)
[»] chr3 (4 HSPs)
chr3 (94-212)||(47985393-47985511)
chr3 (94-212)||(48003967-48004085)
chr3 (94-212)||(47994680-47994798)
chr3 (94-212)||(48013252-48013370)
[»] chr7 (1 HSPs)
chr7 (115-211)||(36212942-36213038)
[»] chr4 (4 HSPs)
chr4 (139-192)||(25569037-25569090)
chr4 (94-209)||(4132618-4132730)
chr4 (94-189)||(4122644-4122739)
chr4 (94-200)||(7884155-7884261)
[»] scaffold1476 (1 HSPs)
scaffold1476 (125-188)||(43-106)
[»] chr2 (1 HSPs)
chr2 (125-188)||(22583333-22583396)
[»] scaffold0294 (1 HSPs)
scaffold0294 (95-191)||(7878-7974)


Alignment Details
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 29 - 209
Target Start/End: Complemental strand, 5398403 - 5398226
Alignment:
Q  29 tcttcagtagagaatctcttgacagggcgttctttttcatcatcactacaagtaattgtattcaaatcatatacaagataaactgttgtcttcttcacaa 128  Q
    |||||||||||||||||||||||||||||||| ||||||||||   |||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  5398403 tcttcagtagagaatctcttgacagggcgttcattttcatcat---tacaagcaattgcattcaaatcatatacaagataaactgttgtcttcttcacaa 5398307  T
Q  129 tgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctctgcccctcttcat 209  Q
    ||||||||||||| ||||||||   |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5398306 tgaaatcattctcgaaaacaaagacaacctcaactttgttaccaggttctatacttgatactaccctttgcccctcttcat 5398226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 5156017 - 5156130
Alignment:
Q  98 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctct 197  Q
    ||||||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  5156017 tatacaagataaactgttgtcttcttcacaatgaaattaatctcgaaaacaaaatggacctccactttgttaccaggttctagacttgatactaccctct 5156116  T
Q  198 gcccctcttcatct 211  Q
    ||||||||||||||    
T  5156117 gcccctcttcatct 5156130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 5372388 - 5372275
Alignment:
Q  98 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctct 197  Q
    ||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||| | ||||||||||||||||||||||| |||||||||||||||||    
T  5372388 tatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggatctccactttgttaccaggttctagacttgatactaccctct 5372289  T
Q  198 gcccctcttcatct 211  Q
    ||||||||||||||    
T  5372288 gcccctcttcatct 5372275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 5178034 - 5177917
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    ||||||||| |||||||||||||| ||||||||||||||| | ||||||||||||| |  ||||||||||||||||| |||||||||||||||||||||     
T  5178034 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactact 5177935  T
Q  194 ctctgcccctcttcatct 211  Q
    ||||| ||||||||||||    
T  5177934 ctctgaccctcttcatct 5177917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 5279859 - 5279742
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    ||||||||| |||||||||||||| ||||||||||||||| | ||||||||||||| |  ||||||||||||||||| |||||||||||||||||||||     
T  5279859 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactact 5279760  T
Q  194 ctctgcccctcttcatct 211  Q
    ||||| ||||||||||||    
T  5279759 ctctgaccctcttcatct 5279742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 5688903 - 5689020
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    ||||||||| |||||||||||||| ||||||||||||||| | |||||||||||| ||  ||||||||||||||||| |||||||||||||||||||||     
T  5688903 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 5689002  T
Q  194 ctctgcccctcttcatct 211  Q
    ||||| ||||||||||||    
T  5689003 ctctgtccctcttcatct 5689020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 94 - 210
Target Start/End: Complemental strand, 2939210 - 2939094
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    ||||||||| ||||||| ||||| ||||||||||||| |||||||||| | ||||||||| |||||||||||||||||||||| || |||||||||||||    
T  2939210 atcatatacgagataaattgttgccttcttcacaatgcaatcattctcgataacaaaatggacctccactttgttaccaggttatagacttgatactacc 2939111  T
Q  194 ctctgcccctcttcatc 210  Q
    |||||||| ||||||||    
T  2939110 ctctgcccttcttcatc 2939094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 5180774 - 5180891
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    ||||||||| ||||||| || |||||||||||||||||||   |||||||||||||||   ||||||||||||||||| |||||||| ||||||||||||    
T  5180774 atcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactacc 5180873  T
Q  194 ctctgcccctcttcatct 211  Q
    ||||| ||||||||||||    
T  5180874 ctctgaccctcttcatct 5180891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 5351695 - 5351578
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    ||||||||| |||||||||  |||||| ||||||||| |||||||||| |||||||||   ||||||||||||||||  ||||||||||||||||||| |    
T  5351695 atcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactgggttctatacttgatactaac 5351596  T
Q  194 ctctgcccctcttcatct 211  Q
    ||||||||||| ||||||    
T  5351595 ctctgcccctcctcatct 5351578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 5334457 - 5334363
Alignment:
Q  117 tcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctctgcccctcttcatct 211  Q
    ||||||||| ||||||||||||||| |||||||||   ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||    
T  5334457 tcttcttcaaaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatct 5334363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 5242512 - 5242621
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    ||||||||| |||||||||  |||||||||||||||||||   |||||||||||||||   |||||||||||||||||||||||||||||| |||||||     
T  5242512 atcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttcatactact 5242611  T
Q  194 ctctgcccct 203  Q
    ||| ||||||    
T  5242612 ctcagcccct 5242621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 5346324 - 5346207
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    ||||||||  ||||||| || ||||||||||||||||||| ||||||||| |||||    |||||||||||||||||||||||||||||||||||| ||     
T  5346324 atcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaact 5346225  T
Q  194 ctctgcccctcttcatct 211  Q
    ||||| ||||| ||||||    
T  5346224 ctctggccctcctcatct 5346207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 5439306 - 5439189
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    ||||||||| |||||| ||| |||||| ||  |||||||||||||||  |||||||||  ||||||||||||||||||||||||||||||||||  || |    
T  5439306 atcatatacgagataagctgctgtctttttggcaatgaaatcattcttgaaaacaaaaacaacctccactttgttaccaggttctatacttgattttaac 5439207  T
Q  194 ctctgcccctcttcatct 211  Q
    ||||||||||| ||||||    
T  5439206 ctctgcccctcctcatct 5439189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 5098506 - 5098389
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaa-aatgaacctccactttgttaccaggttctatacttgatactac 192  Q
    ||||||||| |||||||||| |||||| ||||||||||||   ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |||    
T  5098506 atcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatga-cctccactttgttaccaggttctatacttgatattac 5098408  T
Q  193 cctctgcccctcttcatct 211  Q
    |||||| | ||| ||||||    
T  5098407 cctctggctctcctcatct 5098389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 94 - 191
Target Start/End: Original strand, 23127310 - 23127407
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatacta 191  Q
    |||||||||||||||||||||||| |||||||||| |||| ||||||||||||| | |  |||||||| ||||||||||||||||  |||||||||||    
T  23127310 atcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttctgcacttgatacta 23127407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 5100822 - 5100920
Alignment:
Q  98 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctc 196  Q
    ||||| |||||||||| |||||| ||||||||||||   ||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||||||    
T  5100822 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctc 5100920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 5135923 - 5136021
Alignment:
Q  98 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctc 196  Q
    ||||| |||||||||| |||||| ||||||||||||   ||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||||||    
T  5135923 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctc 5136021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 5256114 - 5256220
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    ||||||||| | ||||| || ||||||||||||||||||||||||||  ||||||||    ||||||||||||||||| ||||| |||||||||| ||||    
T  5256114 atcatataccaaataaattgctgtcttcttcacaatgaaatcattcttgaaaacaaatacgacctccactttgttacctggttcaatacttgatattacc 5256213  T
Q  194 ctctgcc 200  Q
    |||||||    
T  5256214 ctctgcc 5256220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 5448904 - 5448794
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    ||||||||| ||||| |||  |||||||| |||| ||||||||||||| |||||||||   | |||||||||||| || ||||||||||||||||||| |    
T  5448904 atcatataccagatatactactgtcttctccacagtgaaatcattctcgaaaacaaaaacgatctccactttgtttccgggttctatacttgatactaac 5448805  T
Q  194 ctctgcccctc 204  Q
    |||||||||||    
T  5448804 ctctgcccctc 5448794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 5065449 - 5065566
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    ||||||||  ||||||||||||||| ||||||||| |||| | ||||||||||||| |  ||  |||||||| || |||||||| ||||||||||||||     
T  5065449 atcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatactact 5065548  T
Q  194 ctctgcccctcttcatct 211  Q
    ||||||||||| ||||||    
T  5065549 ctctgcccctcctcatct 5065566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 5126629 - 5126746
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    ||||||||  |||||||| | ||||||||||||||||||| | |||| |||||||| |  || ||| ||||||||||||| ||||||||||||||||||     
T  5126629 atcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatactact 5126728  T
Q  194 ctctgcccctcttcatct 211  Q
    |||| |||||| ||||||    
T  5126729 ctctccccctcctcatct 5126746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 5352863 - 5352980
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    ||||||||| ||||||| ||||||||||||||| ||||||  |||||| ||||||| |   ||||| ||||||| |||||| || ||||||||||||||     
T  5352863 atcatataccagataaattgttgtcttcttcacgatgaaacaattctcgaaaacaataaccacctctactttgtcaccaggatccatacttgatactact 5352962  T
Q  194 ctctgcccctcttcatct 211  Q
    ||||||||||| ||||||    
T  5352963 ctctgcccctcctcatct 5352980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 5427195 - 5427078
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    ||||||||| |||||||||  ||||||| |||||| ||||   |||||||||||||||   ||||||| ||||||||||||||||||||||||||||||     
T  5427195 atcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttgatactact 5427096  T
Q  194 ctctgcccctcttcatct 211  Q
    || | |||||| ||||||    
T  5427095 ctttccccctcctcatct 5427078  T

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Target: chr6; HSP #24
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 5283224 - 5283330
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaa-atgaacctccactttgttaccaggttctatacttgatactac 192  Q
    ||||||||| ||||||| || |||||||||||||||||||   || ||||||||||| |||| |||||||||||||||| ||||| |||||||||| |||    
T  5283224 atcatataccagataaattgctgtcttcttcacaatgaaactgttttcaaaaacaaatatga-cctccactttgttacctggttcgatacttgatattac 5283322  T
Q  193 cctctgcc 200  Q
    ||||||||    
T  5283323 cctctgcc 5283330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 191
Target Start/End: Original strand, 5072692 - 5072779
Alignment:
Q  104 agataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatacta 191  Q
    ||||||| | ||||||| |||||||||||||| ||||||| |||||    ||||||||||| ||||||||| ||||||||||||||||    
T  5072692 agataaattattgtctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttaccaggctctatacttgatacta 5072779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 204
Target Start/End: Complemental strand, 5253827 - 5253718
Alignment:
Q  95 tcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccc 194  Q
    |||||||  ||||||||||| ||| ||||||||||||||   ||||||||||||| |  || ||||||||| || |||||||| |||||| ||| ||| |    
T  5253827 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactc 5253728  T
Q  195 tctgcccctc 204  Q
    | ||||||||    
T  5253727 tttgcccctc 5253718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 2657155 - 2657210
Alignment:
Q  98 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatg 153  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||| || ||||||||    
T  2657155 tatacgagataaattgttgccttcttcacaatgaaatcattctcgaatacaaaatg 2657210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 5242400 - 5242459
Alignment:
Q  25 ctcctcttcagtagagaatctcttgacagggcgttctttttcatcatcactacaagtaat 84  Q
    ||||||||||||||||||||||||||||| |||||| | ||||||| | ||| |||||||    
T  5242400 ctcctcttcagtagagaatctcttgacagagcgttcatcttcatcacctctataagtaat 5242459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 5352752 - 5352803
Alignment:
Q  25 ctcctcttcagtagagaatctcttgacagggcgttctttttcatcatcacta 76  Q
    |||||||||| |||||||||||||||||||| | || |||||||||||||||    
T  5352752 ctcctcttcaatagagaatctcttgacagggtgctcattttcatcatcacta 5352803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 5124443 - 5124553
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    |||||||| || ||| | |||||||| ||||||||||||    |||| ||||||||||  ||  |||||||| ||||||||||||||||| |||||||      
T  5124443 atcatatataatatacattgttgtctccttcacaatgaagcggttcttaaaaacaaaaacaaattccactttattaccaggttctatactcgatactaat 5124542  T
Q  194 ctctgcccctc 204  Q
    || ||||||||    
T  5124543 ctatgcccctc 5124553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 5155918 - 5155973
Alignment:
Q  41 aatctcttgacagggcgttctttttcatcatcactacaagtaattgtattcaaatc 96  Q
    ||||||||||||| | |||| |||||||||| |||||||| ||||| |||||||||    
T  5155918 aatctcttgacagagagttcattttcatcattactacaagaaattgcattcaaatc 5155973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 5439384 - 5439339
Alignment:
Q  25 ctcctcttcagtagagaatctcttgacagggcgttctttttcatca 70  Q
    ||||||| ||||||||||||||||  |||||||||| |||||||||    
T  5439384 ctcctctccagtagagaatctcttagcagggcgttcattttcatca 5439339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 5100782 - 5100810
Alignment:
Q  25 ctcctcttcagtagagaatctcttgacag 53  Q
    |||||||||||||||||||||||||||||    
T  5100782 ctcctcttcagtagagaatctcttgacag 5100810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 5135883 - 5135911
Alignment:
Q  25 ctcctcttcagtagagaatctcttgacag 53  Q
    |||||||||||||||||||||||||||||    
T  5135883 ctcctcttcagtagagaatctcttgacag 5135911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 5351731 - 5351703
Alignment:
Q  25 ctcctcttcagtagagaatctcttgacag 53  Q
    |||||||||||||||||||||||||||||    
T  5351731 ctcctcttcagtagagaatctcttgacag 5351703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 47985393 - 47985511
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    |||||||||||||||||||| | || |||||||||||||| ||||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||     
T  47985393 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 47985492  T
Q  194 ctctgcccctcttcatctc 212  Q
    |||| |||||| |||||||    
T  47985493 ctctccccctcctcatctc 47985511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 48003967 - 48004085
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    |||||||||||||||||||| | || |||||||||||||| ||||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||     
T  48003967 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 48004066  T
Q  194 ctctgcccctcttcatctc 212  Q
    |||| |||||| |||||||    
T  48004067 ctctccccctcctcatctc 48004085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 47994680 - 47994798
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    |||||||||||||||||||| | || |||||||||||||| ||||||||||||||| |   ||||||||||||||||| | ||||||||||||||||||     
T  47994680 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 47994779  T
Q  194 ctctgcccctcttcatctc 212  Q
    |||| |||||| |||||||    
T  47994780 ctctccccctcctcatctc 47994798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 48013252 - 48013370
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    |||||||||||||||||||| | || |||||||||||||| ||||||||||||||| |   ||||||||||||||||| | ||||||||||||||||||     
T  48013252 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 48013351  T
Q  194 ctctgcccctcttcatctc 212  Q
    |||| |||||| |||||||    
T  48013352 ctctccccctcctcatctc 48013370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 36212942 - 36213038
Alignment:
Q  115 tgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctctgcccctcttcatct 211  Q
    ||||||||||||||||||||  ||||||||||||| |  |||||||| ||| | |||||||||||||||||||||||  ||||||||||| ||||||    
T  36212942 tgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatactaatctctgcccctcctcatct 36213038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 25569090 - 25569037
Alignment:
Q  139 ctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 192  Q
    |||||||||||||  ||||||||||||||| |||||||||||||||||||||||    
T  25569090 ctcaaaaacaaaaacaacctccactttgtttccaggttctatacttgatactac 25569037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 4132618 - 4132730
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    ||||||||  |||||||||| ||||||| |||||||||||   ||| |||||||||    || ||| ||||||| ||||||||| ||| ||||||||||     
T  4132618 atcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacaa---caatctcgactttgtcaccaggttccatatttgatactact 4132714  T
Q  194 ctctgcccctcttcat 209  Q
    ||||||| ||| ||||    
T  4132715 ctctgccactcctcat 4132730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 4122644 - 4122739
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatac 189  Q
    ||||||||  |||||||||| ||||||| |||||||||||   ||  ||||||||| |  || ||||||||||| ||||||||| ||| |||||||    
T  4122644 atcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactttgtcaccaggttccatatttgatac 4122739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 7884155 - 7884261
Alignment:
Q  94 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 193  Q
    |||||| |||||||||| |||||| |||||||||||||| |||||   |||||||| |   ||||  | || ||| |||||||||||| |||||| |||     
T  7884155 atcatagacaagataaattgttgttttcttcacaatgaattcatttgtaaaaacaacaaccaccttaatttcgtttccaggttctatatttgatattact 7884254  T
Q  194 ctctgcc 200  Q
    |||||||    
T  7884255 ctctgcc 7884261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1476 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 106 - 43
Alignment:
Q  125 acaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgata 188  Q
    ||||||||||  |||||| |||||| |  |||||||||||| ||||||||||||||||||||||    
T  106 acaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctatacttgata 43  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 22583333 - 22583396
Alignment:
Q  125 acaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgata 188  Q
    ||||||||||  |||||| |||||| |  |||||||||||| ||||||||||||||||||||||    
T  22583333 acaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctatacttgata 22583396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 191
Target Start/End: Original strand, 7878 - 7974
Alignment:
Q  95 tcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatacta 191  Q
    ||||||| |||||||| |||||| |  ||| |||||||| | | | ||||||||| |  ||||||||||||||| || ||||||| |||||||||||    
T  7878 tcatatataagataaattgttgtttctttcgcaatgaaaccgtccccaaaaacaacaacaacctccactttgtttccgggttctacacttgatacta 7974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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