View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_49 (Length: 221)
Name: NF19001_low_49
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 42832789 - 42832975
Alignment:
| Q |
20 |
tataaagccttacaggaagatattagtattatacacagtaataaattccatcatcttttgctagctttttaccccttcatggaattttgagnnnnnnnng |
119 |
Q |
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| T |
42832789 |
tataaagccttacaggcagatattagtattatacacagtaataaattccatcatcttttgctagctttttaccccttcatggaattttgagttttttttg |
42832888 |
T |
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| Q |
120 |
cctttaggagtcatctgtaccaaaatatcggtcaccaaattctcctagcccaggcacgacacggaactggtcatttagtccttcatc |
206 |
Q |
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| T |
42832889 |
cctttaggagtcatctgtaccaaaatatcggtcaccaaattctcctagcccaggcacgacacggaactgatcatttagtccttcatc |
42832975 |
T |
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