View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_5 (Length: 700)
Name: NF19001_low_5
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-175; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 361 - 684
Target Start/End: Original strand, 32726460 - 32726783
Alignment:
| Q |
361 |
caatgtttcaatctccgtgcatccaatgagtctcaaatcttgcaaatagatcggggaagtcttctgattttgcgattattgataaggttgagaactcgca |
460 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32726460 |
caatgtttcaatctccgtgcatccaatgagtctcaaatcttgcaaatagattggggaagtcttctgattttgcgattattgataaggttgagaactcgca |
32726559 |
T |
|
| Q |
461 |
aatgctccaatttagcaatcgagttaggtagggtatcaaaggaagaatctcttaaacctaaatatcacaagtatttgtatcttgatatccatgtgttcag |
560 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32726560 |
aatgctccaatttagcaatcgagttaggtagggtatcaaaggaagaatctcttaaacctaaatatcgcaagtatttgtatcttgatatccatgtgttcag |
32726659 |
T |
|
| Q |
561 |
caaagtttgactatcaaggcccactcctttcatgggaaataaaatagttctcaaacttttggacttggggaaaaaaccaatgtccagtgaattattttcg |
660 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32726660 |
caaagtttgactatcaaggcccactcctttcatgggaaataaaatagttctcaaacttttggacttggggaaaaaaccaatgtccagtgaattattttcg |
32726759 |
T |
|
| Q |
661 |
acaactgttacttgtcttgtatgt |
684 |
Q |
| |
|
||||||||||| |||||||||||| |
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| T |
32726760 |
acaactgttacgtgtcttgtatgt |
32726783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 32725861 - 32726065
Alignment:
| Q |
13 |
tcatcaaacatacagatacaaacactttgagaatctaaaacctcttgctgctggcatgccattcattcatcttctccaaagccatcaactacttgaatgc |
112 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32725861 |
tcatcaaacatacagatacaaacattttgagaatctaaaacctcttgctgctggcatggcattcgttcatcttctccaaagccatcaactacttgaatgc |
32725960 |
T |
|
| Q |
113 |
tgagcaatcatacctgactgaggttaacattttccggacaaccctccaagtattcaagggtagtgaggcgatgcatgtcacttggaagactcaacagtca |
212 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32725961 |
tgagcaatcatacctgactgtggttaacattttccggacaaccctccaagtattcaagggtagtgaggcgatgcatgtcacttggaagactcaacagtca |
32726060 |
T |
|
| Q |
213 |
taaat |
217 |
Q |
| |
|
|||| |
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|
| T |
32726061 |
aaaat |
32726065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 212 - 371
Target Start/End: Original strand, 32726132 - 32726290
Alignment:
| Q |
212 |
ataaatgtttcatcatcaatctttggattggtcttttattgtataatgataggtttatcatctcacagtctgaaattatcaaatcctgtaatttaggaaa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
32726132 |
ataaatgtttcatcatcaatctttggattggtcttttattgtacaatgataggtttatcatctgacagtctgaaattatcagatcctgtaatttaggaaa |
32726231 |
T |
|
| Q |
312 |
aataaaaagaggtaa-gtaaggactctagactaccacatgaaagaatagtcaatgtttcaa |
371 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
32726232 |
aat--aaagaggtaaggtaaggactctagactaccacatgaaagaatagtcaatttttcaa |
32726290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 466 - 611
Target Start/End: Original strand, 35980998 - 35981143
Alignment:
| Q |
466 |
tccaatttagcaatcgagttaggtagggtatcaaaggaagaatctcttaaacctaaatatcacaagtatttgtatcttgatatccatgtgttcagcaaag |
565 |
Q |
| |
|
|||||||||||||| || || |||||| ||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||||| | | |||| || |
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| T |
35980998 |
tccaatttagcaatagaatttggtaggatatcaaatgaagaattacttaaatctaaatatcttaagtatttgtatcttgatatccatatatctagcagag |
35981097 |
T |
|
| Q |
566 |
tttgactatcaaggcccactcctttcatgggaaataaaatagttct |
611 |
Q |
| |
|
||| |||| |||| |||| |||||| ||||||||||| | |||||| |
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| T |
35981098 |
tttcactagcaagacccagtcctttgatgggaaataataaagttct |
35981143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 466 - 611
Target Start/End: Original strand, 36002410 - 36002555
Alignment:
| Q |
466 |
tccaatttagcaatcgagttaggtagggtatcaaaggaagaatctcttaaacctaaatatcacaagtatttgtatcttgatatccatgtgttcagcaaag |
565 |
Q |
| |
|
|||||||||||||| || || |||||| ||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||||| | | |||| || |
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| T |
36002410 |
tccaatttagcaatagaatttggtaggatatcaaatgaagaattacttaaatctaaatatcttaagtatttgtatcttgatatccatatatctagcagag |
36002509 |
T |
|
| Q |
566 |
tttgactatcaaggcccactcctttcatgggaaataaaatagttct |
611 |
Q |
| |
|
||| |||| |||| |||| |||||| ||||||||||| | |||||| |
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| T |
36002510 |
tttcactagcaagacccagtcctttgatgggaaataataaagttct |
36002555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 35945128 - 35945174
Alignment:
| Q |
165 |
ttcaagggtagtgaggcgatgcatgtcacttggaagactcaacagtc |
211 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
35945128 |
ttcaagggcggtgaggcgatgcatgtcacttggaagactcaacagtc |
35945174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 547
Target Start/End: Complemental strand, 36223884 - 36223799
Alignment:
| Q |
462 |
atgctccaatttagcaatcgagttaggtagggtatcaaaggaagaatctcttaaacctaaatatcacaagtatttgtatcttgata |
547 |
Q |
| |
|
||||||||||||| |||| || ||||| || || |||||||||||| | |||||| |||||||| ||||||||| |||||||||| |
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| T |
36223884 |
atgctccaatttaacaattgaattaggcagagtgtcaaaggaagaaccacttaaatttaaatatcgcaagtatttatatcttgata |
36223799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 522 - 629
Target Start/End: Complemental strand, 36218628 - 36218521
Alignment:
| Q |
522 |
atatcacaagtatttgtatcttgatatccatgtgttcagcaaagtttgactatcaaggcccactcctttcatgggaaataaaatagttctcaaacttttg |
621 |
Q |
| |
|
||||| ||||||||| ||| |||||| ||| || | || ||| |||| | | |||||||||||||||| | ||||||||||||||||| | ||||||| |
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|
| T |
36218628 |
atatcgcaagtatttatattttgatacccacgtatgcaccaatgtttcattgtcaaggcccactccttcgacaggaaataaaatagttcttacacttttg |
36218529 |
T |
|
| Q |
622 |
gacttggg |
629 |
Q |
| |
|
|||||||| |
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|
| T |
36218528 |
gacttggg |
36218521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 35956335 - 35956380
Alignment:
| Q |
165 |
ttcaagggtagtgaggcgatgcatgtcacttggaagactcaacagt |
210 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||| |
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|
| T |
35956335 |
ttcaagggcggtgaggcgatgcatgttacttggaagactcaacagt |
35956380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 35975790 - 35975835
Alignment:
| Q |
165 |
ttcaagggtagtgaggcgatgcatgtcacttggaagactcaacagt |
210 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
35975790 |
ttcaagggcggtgaggcgatgcatatcacttggaagactcaacagt |
35975835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 35997202 - 35997247
Alignment:
| Q |
165 |
ttcaagggtagtgaggcgatgcatgtcacttggaagactcaacagt |
210 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
35997202 |
ttcaagggcggtgaggcgatgcatatcacttggaagactcaacagt |
35997247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 449 - 628
Target Start/End: Complemental strand, 26329734 - 26329555
Alignment:
| Q |
449 |
tgagaactcgcaaatgctccaatttagcaatcgagttaggtagggtatcaaaggaagaatctcttaaacctaaatatcacaagtatttgtatcttgatat |
548 |
Q |
| |
|
|||||||||| | | | |||||||||| |||||| ||||| || ||||| |||||||| |||||| ||||||| | ||||||||||||||||||||| |
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|
| T |
26329734 |
tgagaactcgaagaaggtccaatttagaaatcgaattaggcagctcctcaaatgaagaatcacttaaatctaaatagcgcaagtatttgtatcttgatat |
26329635 |
T |
|
| Q |
549 |
ccatgtgttcagcaaagtttgactatcaaggcccactcctttcatgggaaataaaatagttctcaaacttttggacttgg |
628 |
Q |
| |
|
||||| | || | ||||| |||||| | || ||||||| |||||| | ||||||||||||| |||||| ||||||| |
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|
| T |
26329634 |
ccatgaatccaagagagtttcactatcgacacctactccttggatgggacacaaaatagttctcacacttttcgacttgg |
26329555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 18132442 - 18132481
Alignment:
| Q |
169 |
agggtagtgaggcgatgcatgtcacttggaagactcaaca |
208 |
Q |
| |
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||||||||||| ||||||||| |||||||||||||||||| |
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| T |
18132442 |
agggtagtgagacgatgcatgccacttggaagactcaaca |
18132481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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