View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19001_low_7 (Length: 597)

Name: NF19001_low_7
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19001_low_7
NF19001_low_7
[»] scaffold0291 (1 HSPs)
scaffold0291 (19-587)||(4363-4931)
[»] chr4 (6 HSPs)
chr4 (36-103)||(11578206-11578273)
chr4 (54-85)||(7916594-7916625)
chr4 (135-186)||(7916675-7916726)
chr4 (33-87)||(21198512-21198566)
chr4 (138-172)||(24951227-24951261)
chr4 (33-87)||(27254354-27254408)
[»] chr3 (1 HSPs)
chr3 (135-230)||(8417437-8417532)
[»] chr7 (3 HSPs)
chr7 (32-88)||(36811355-36811411)
chr7 (285-385)||(36811602-36811702)
chr7 (29-73)||(29048154-29048198)
[»] chr5 (1 HSPs)
chr5 (24-90)||(2766313-2766379)
[»] scaffold0305 (1 HSPs)
scaffold0305 (137-175)||(14516-14554)
[»] chr8 (1 HSPs)
chr8 (140-193)||(11704391-11704444)


Alignment Details
Target: scaffold0291 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 19 - 587
Target Start/End: Original strand, 4363 - 4931
Alignment:
Q  19 taactgaagctgaatctgaatgccatgcctcaggaaaagcttcatcagcttgtgttcccatccaaacagctaacataacttcacctcttgttcttgtttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4363 taactgaagctgaatctgaatgccatgcctcaggaaaagcttcatcagcttgtgttcccatccaaacagctaacataacttcacctcttgttcttgtttc 4462  T
Q  119 acctttcaaattccctagtctataccattgcggagccaaaggactatctggtggaactcttgttggaacttcatgcatatcaaattcaacttttccaata 218  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4463 acctttcaaattccctagtctataccattgcggcgccaaaggactatctggtggaactcttgttggaacttcatgcatatcaaattcaacttttccaata 4562  T
Q  219 taatcatctctagctaccatctctttgtctcttacaaatacttcaacaaccgatgattgtatcttctccttcgagaaagcgaaaacttgcttccattcgg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4563 taatcatctctagctaccatctctttgtctcttacaaatacttcaacaaccgatgattgtatcttctccttcgagaaagcgaaaacttgcttccattcgg 4662  T
Q  319 ggtttgttttcttctcaaagtgtcttgtttttcctttgtagttgccaactttcacttcaacataaggatctacatttcctgtgactggatttggtggcaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4663 ggtttgttttcttctcaaagtgtcttgtttttcctttgtagttgccaactttcacttcaacataaggatctacatttcctgtgactggatttggtggcaa 4762  T
Q  419 ttctttggctttgacaacacgaacatagaggtagaacatctgttccacaaggtcgtaagtgctcgttgctctttcgctgtatagccaaccagttccgcct 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4763 ttctttggctttgacaacacgaacatagaggtagaacatctgttccacaaggtcgtaagtgctcgttgctctttcgctgtatagccaaccagttccgcct 4862  T
Q  519 cgttgtcctccatgtggccatttttctcctagctctggctttgtgtcttttagcttgtaatcatctgtg 587  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863 cgttgtcctccatgtggccatttttctcctagctctggctttgtgtcttttagcttgtaatcatctgtg 4931  T

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Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 11578206 - 11578273
Alignment:
Q  36 gaatgccatgcctcaggaaaagcttcatcagcttgtgttcccatccaaacagctaacataacttcacc 103  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||| | ||||| ||||||    
T  11578206 gaatgccatgcctcaggaaaagactcatcagcttgtgttcccatccaaacagcaagcataatttcacc 11578273  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 85
Target Start/End: Original strand, 7916594 - 7916625
Alignment:
Q  54 aaagcttcatcagcttgtgttcccatccaaac 85  Q
    ||||||||||||||||||||||||||||||||    
T  7916594 aaagcttcatcagcttgtgttcccatccaaac 7916625  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 7916675 - 7916726
Alignment:
Q  135 agtctataccattgcggagccaaaggactatctggtggaactcttgttggaa 186  Q
    ||||| ||||| || |||||||  ||||||||||||||||||||||||||||    
T  7916675 agtctgtaccactgaggagccagtggactatctggtggaactcttgttggaa 7916726  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 21198512 - 21198566
Alignment:
Q  33 tctgaatgccatgcctcaggaaaagcttcatcagcttgtgttcccatccaaacag 87  Q
    ||||||||||| || || ||||||  |||||||||||| ||||||||||||||||    
T  21198512 tctgaatgccaagcatcgggaaaactttcatcagcttgagttcccatccaaacag 21198566  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 24951227 - 24951261
Alignment:
Q  138 ctataccattgcggagccaaaggactatctggtgg 172  Q
    ||||||||||||||||||||||| |||||||||||    
T  24951227 ctataccattgcggagccaaagggctatctggtgg 24951261  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 27254354 - 27254408
Alignment:
Q  33 tctgaatgccatgcctcaggaaaagcttcatcagcttgtgttcccatccaaacag 87  Q
    ||||||||||| || || ||||||  |||||||||||| ||||||||||||||||    
T  27254354 tctgaatgccaagcatcgggaaaactttcatcagcttgagttcccatccaaacag 27254408  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 8417437 - 8417532
Alignment:
Q  135 agtctataccattgcggagccaaaggactatctggtggaactcttgttggaacttcatgcatatcaaattcaacttttccaatataatcatctcta 230  Q
    |||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||  |  |||||  | ||| ||||||| ||||||||||||    
T  8417437 agtctataccattgaggagccaatggactatctggtggaactctagttggaacttcattgaggtcaaaagctactcttccaatgtaatcatctcta 8417532  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 36811355 - 36811411
Alignment:
Q  32 atctgaatgccatgcctcaggaaaagcttcatcagcttgtgttcccatccaaacagc 88  Q
    |||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||    
T  36811355 atctgagtgccacgcctcaggaaaagcttcatcagcttgagtacccatccaaacagc 36811411  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 385
Target Start/End: Original strand, 36811602 - 36811702
Alignment:
Q  285 tccttcgagaaagcgaaaacttgcttccattcggggtttgttttcttctcaaagtgtcttgtttttcctttgtagttgccaactttcacttcaacataag 384  Q
    |||||||| ||||||||||| || |||||||| || || || ||||||||||| || || ||  ||||||||||||| ||||  || |||||||||||||    
T  36811602 tccttcgaaaaagcgaaaacctgattccattcaggattagtcttcttctcaaaatgcctcgtggttcctttgtagttaccaagcttgacttcaacataag 36811701  T
Q  385 g 385  Q
    |    
T  36811702 g 36811702  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 29048198 - 29048154
Alignment:
Q  29 tgaatctgaatgccatgcctcaggaaaagcttcatcagcttgtgt 73  Q
    |||||| |||||||| || ||||||||||| ||||||||||||||    
T  29048198 tgaatcggaatgccaagcatcaggaaaagcctcatcagcttgtgt 29048154  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 2766313 - 2766379
Alignment:
Q  24 gaagctgaatctgaatgccatgcctcaggaaaagcttcatcagcttgtgttcccatccaaacagcta 90  Q
    ||||||| |||||||||||||||||||| ||| |||||||| ||||| || || |||||||||||||    
T  2766313 gaagctgcatctgaatgccatgcctcagaaaatgcttcatctgcttgagtaccaatccaaacagcta 2766379  T

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Target: scaffold0305 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 14516 - 14554
Alignment:
Q  137 tctataccattgcggagccaaaggactatctggtggaac 175  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  14516 tctataccattgcggcgccaaaggactatctgggggaac 14554  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 11704391 - 11704444
Alignment:
Q  140 ataccattgcggagccaaaggactatctggtggaactcttgttggaacttcatg 193  Q
    |||||||| ||||||||| ||||||||||||||||| | ||| ||||| |||||    
T  11704391 ataccattccggagccaacggactatctggtggaacacgtgtaggaacatcatg 11704444  T

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