View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19001_low_9 (Length: 437)
Name: NF19001_low_9
Description: NF19001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19001_low_9 |
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| [»] scaffold1808 (1 HSPs) |
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| [»] scaffold0674 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Complemental strand, 35138444 - 35138032
Alignment:
| Q |
14 |
attatactgttatgatgccattgttacttatgattctaaaacaaacacctttcaaacgaggtacaattcactcccttata---ataattaacaagctcct |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35138444 |
attatactgttatgatgccattgttacttatgattctaaaacaaacacctttcaaacgaggtacaattcactcccttatactaataattaacaagctcct |
35138345 |
T |
|
| Q |
111 |
attgctcttaatttttcttgttgtggatttaatatgaaacataaatttaatcaacatgccacaatata----cttttgttgtaattgtatttcaaatgct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35138344 |
attgctcttaatttttcttgttgtggatttaatatgaaacataaatttaatcaacatgccacaatatatatacttttgttgtaattgtatttcaaatgct |
35138245 |
T |
|
| Q |
207 |
atcaattttataggactccacatggcagaaggcgagtgattgagagagatattccctggaatatgttgaggatgccaccaccaaagacttacttagtgga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35138244 |
atcaattttataggactccacatggcagaaggcgagtgattgagagagatattccctggaatatgttgaggatgccaccaccaaagacttacttagtgga |
35138145 |
T |
|
| Q |
307 |
ttattatgagtataacgatctgaataatttgaaaccaggagattatatcgagattcaaactagaggaaggaaagcattccctctttatggtaacaaagat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35138144 |
ttattatgagtataacgatctgaataatttgaaaccaggagattatatcgagattcaaactagaggaaggaaagcattccctctttatggtaacaaagat |
35138045 |
T |
|
| Q |
407 |
ccacttttatcat |
419 |
Q |
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||||||||||||| |
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| T |
35138044 |
ccacttttatcat |
35138032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 117 - 399
Target Start/End: Complemental strand, 35131063 - 35130773
Alignment:
| Q |
117 |
cttaatttttcttgttgtggatttaatatgaaacataaatttaatcaacatgccacaatatacttttgttgtaattg--------tatttcaaatgctat |
208 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||||||| ||| |
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| T |
35131063 |
cttaatttttcttgttgtagatttaatatgaaacataaatttgatcaacatgacacgatatacttttgttgtaattgactaattgtatttcaaattatat |
35130964 |
T |
|
| Q |
209 |
caattttataggactccacatggcagaaggcgagtgattgagagagatattccctggaatatgttgaggatgccaccaccaaagacttacttagtggatt |
308 |
Q |
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|||||||||||| |||| ||||||||| |||| ||||||||||||||||| ||||| |||||||||| |||||||| ||||||||||| |||||||||| |
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| T |
35130963 |
caattttataggtgtccatatggcagaaagcgattgattgagagagatatttcctgggatatgttgagaatgccaccgccaaagacttatttagtggatt |
35130864 |
T |
|
| Q |
309 |
attatgagtataacgatctgaataatttgaaaccaggagattatatcgagattcaaactagaggaaggaaagcattccctctttatggtaa |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| | ||||||| |||||||||| |
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| T |
35130863 |
attatgagtataacgatctgaataatttgaaaccaggagatcatatcgagattcaaaagagagggaggagattattccctatttatggtaa |
35130773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 35131136 - 35131063
Alignment:
| Q |
14 |
attatactgttatgatgccattgttacttatgattctaaaacaaacacctttcaaacgaggtacaattcactcc |
87 |
Q |
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|||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||||| ||||| |||||||||| |
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| T |
35131136 |
attacactgttatgatgccattgttagttatgattctagaacagacacctttcaaacaaggtaaaattcactcc |
35131063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 14 - 399
Target Start/End: Complemental strand, 14277868 - 14277484
Alignment:
| Q |
14 |
attatactgttatgatgccattgttacttatgattctaaaacaaacacctttcaaacgaggtacaattcactcccttataataattaacaagctcctatt |
113 |
Q |
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||||||||||||||| ||||| |||| ||||||||||||||| | ||||||| | | ||||||| |||||| || ||| || |||||| || ||||||| |
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| T |
14277868 |
attatactgttatgacgccatcgttagctatgattctaaaacagatacctttcgagcaaggtacacttcactaccatatgatgattaactagttcctatt |
14277769 |
T |
|
| Q |
114 |
gctcttaatt----tttcttgttgtggatttaatatgaaacataaatttaatcaacatgccacaatatacttttgttgtaattgtatttcaaatgctatc |
209 |
Q |
| |
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||| |||| ||| ||||||| ||||||||||||| |||||| | |||||| || || | || | ||||| ||||||||||||||| ||||| |
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| T |
14277768 |
attctgaattaaattttattgttgttgatttaatatgaatcataaaataaatcaa--tgacatcaaat---tgtgttgaaattgtatttcaaattctatc |
14277674 |
T |
|
| Q |
210 |
aattttataggactccacatggcagaaggcgagtgattgagagagatattccctggaatatgttgaggatgccaccaccaaagacttacttagtggatta |
309 |
Q |
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||||||||||| ||||| || | | | | |||| | |||||||||||||| |||||||||| || ||||| |||||||| | ||||||||||| |
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| T |
14277673 |
aattttataggtctccaaatttagggcgacaatggattcaaggagatattccctgggatatgttgagaataccacctccaaagacatttttagtggatta |
14277574 |
T |
|
| Q |
310 |
ttatgagtataacgatctgaataatttgaaaccaggagattatatcgagattcaaactagaggaaggaaagcattccctctttatggtaa |
399 |
Q |
| |
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|||||||||| ||| || || | ||||||||||| ||| ||| |||||||||| ||| |||||| || ||||||| ||| |||||| |
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| T |
14277573 |
ctatgagtatactgatttggatgaattgaaaccaggtgatcttattgagattcaaaagagaagaaggataggattccctatttgtggtaa |
14277484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 14258022 - 14257870
Alignment:
| Q |
16 |
tatactgttatgatgccattgttacttatgattctaaaacaaacacctttcaaacgaggtacaattcactcccttataataattaacaagctccta---- |
111 |
Q |
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|||||||||||||||||||||||| | |||||| ||||||| ||||||||| | | ||||||||||||| ||||| || ||||| |||||||| |
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| T |
14258022 |
tatactgttatgatgccattgttagtaatgattataaaacagacacctttcgagcagggtacaattcactaccttacgctagttaactagctcctattat |
14257923 |
T |
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| Q |
112 |
ttgctcttaatttttcttgttgtggatttaatatgaaacataaatttaatcaa |
164 |
Q |
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|| | |||| |||| ||||||||||||||||| ||| |||||| |||||||| |
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| T |
14257922 |
tttcaattaacttttattgttgtggatttaatacgaagcataaagttaatcaa |
14257870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1808 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold1808
Description:
Target: scaffold1808; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 252 - 400
Target Start/End: Original strand, 269 - 417
Alignment:
| Q |
252 |
gagatattccctggaatatgttgaggatgccaccaccaaagacttacttagtggattattatgagtataacgatctgaataatttgaaaccaggagatta |
351 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| |||||||| | |||||||||||||||||||||| ||| || || | ||||||||||||||| |
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| T |
269 |
gagatattccctgggatatgttgagaatgccacctccaaagacatttttagtggattattatgagtatactgatttggatgaattgaaaccaggagatct |
368 |
T |
|
| Q |
352 |
tatcgagattcaaactagaggaaggaaagcattccctctttatggtaac |
400 |
Q |
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||| || ||||||| |||| |||||| || ||||||| ||| ||||||| |
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| T |
369 |
tattgaaattcaaaatagaagaaggataggattccctatttgtggtaac |
417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0674 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0674
Description:
Target: scaffold0674; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 252 - 400
Target Start/End: Complemental strand, 3490 - 3342
Alignment:
| Q |
252 |
gagatattccctggaatatgttgaggatgccaccaccaaagacttacttagtggattattatgagtataacgatctgaataatttgaaaccaggagatta |
351 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| |||||||| | |||||||||||||||||||||| ||| || || | ||||||||||||||| |
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| T |
3490 |
gagatattccctgggatatgttgagaatgccacctccaaagacatttttagtggattattatgagtatactgatttggatgaattgaaaccaggagatct |
3391 |
T |
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| Q |
352 |
tatcgagattcaaactagaggaaggaaagcattccctctttatggtaac |
400 |
Q |
| |
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||| || ||||||| |||| |||||| || ||||||| ||| ||||||| |
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| T |
3390 |
tattgaaattcaaaatagaagaaggataggattccctatttgtggtaac |
3342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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