View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19002_high_21 (Length: 254)
Name: NF19002_high_21
Description: NF19002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19002_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 4685024 - 4685247
Alignment:
| Q |
20 |
aagtgaactccaaaaagttgaaaattnnnnnnncacagcccatatataaattgattccagtttaagaaagacaagaagaacaaaccttattcttctgttc |
119 |
Q |
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| T |
4685024 |
aagtgaactccaaaaagttgaaaattaaaaaaacacagcccatatataaattgattccagtttaagaaagacaagaagaacaaaccttattcttctgttc |
4685123 |
T |
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| Q |
120 |
tggcaatactaaattcctggaattgtctatacaaaatacttttcttttctgccacactaaatataaaattagtaacttcattatcctctcccattttaaa |
219 |
Q |
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| T |
4685124 |
tggcaatactaaattcctggaattgtctatacaaaatacttttcttttctgccacactaaatataaaattagtaacttcattatcctctcccattttaaa |
4685223 |
T |
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| Q |
220 |
aataatatcaattctctctcctat |
243 |
Q |
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|||||||||||||||||||||||| |
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| T |
4685224 |
aataatatcaattctctctcctat |
4685247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 24677549 - 24677493
Alignment:
| Q |
164 |
ttttctgccacactaaatataaaattagtaacttcattatcctctcccattttaaaa |
220 |
Q |
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| T |
24677549 |
ttttctgccacactaaaaataaaattagtaacttctttatcctctcccattttaaaa |
24677493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 47847305 - 47847212
Alignment:
| Q |
83 |
aagaaagacaagaagaacaaaccttattcttctgttctggcaatactaaattcctggaat-tgtctatacaaaatacttttcttttctgccacac |
176 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||| | ||||||| |||||| || |||||||||||||| |
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| T |
47847305 |
aagaaagacaagaagaacaaaccttattctcctattctggcaatactaaatatctgaaatatttctatac-aaataccttacttttctgccacac |
47847212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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