View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19002_high_24 (Length: 238)
Name: NF19002_high_24
Description: NF19002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19002_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 28394553 - 28394417
Alignment:
| Q |
86 |
gacctttcatgataagaaaagnnnnnnncacaaaagagaaataatattgtttggtcgtggcaaagttatttatagaatgtgaaccaataggtgacaacat |
185 |
Q |
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| T |
28394553 |
gacctttcatgataagaaaagaaaaaaacacaaaagagaaataatattgtttggtcgtggcaaagttatttatagaatgtgaaccaataggtgacaacat |
28394454 |
T |
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| Q |
186 |
attttttcattgattcaacgtattgtaggatcaattt |
222 |
Q |
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| T |
28394453 |
attttttcattgattcaacgtattgtaggatcaattt |
28394417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 28369976 - 28369869
Alignment:
| Q |
114 |
cacaaaagagaaataatattgtttggtcgtggcaaagttatttatag-aatgtgaa-ccaataggtgacaacatattttttcattgattcaacgtattgt |
211 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||||||| | |||||||| |
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| T |
28369976 |
cacaaaagagaaataatactgtttggccgtggcaaagttatttatagaaatatgaacccaataggtgacaacatatttttgcattgattgagcgtattgt |
28369877 |
T |
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| Q |
212 |
aggatcaa |
219 |
Q |
| |
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|||||||| |
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| T |
28369876 |
aggatcaa |
28369869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 28377794 - 28377687
Alignment:
| Q |
114 |
cacaaaagagaaataatattgtttggtcgtggcaaagttatttatag-aatgtgaa-ccaataggtgacaacatattttttcattgattcaacgtattgt |
211 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||||||| | |||||||| |
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| T |
28377794 |
cacaaaagagaaataatactgtttggccgtggcaaagttatttatagaaatatgaacccaataggtgacaacatatttttgcattgattgagcgtattgt |
28377695 |
T |
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| Q |
212 |
aggatcaa |
219 |
Q |
| |
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|||||||| |
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| T |
28377694 |
aggatcaa |
28377687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 28385616 - 28385509
Alignment:
| Q |
114 |
cacaaaagagaaataatattgtttggtcgtggcaaagttatttatag-aatgtgaa-ccaataggtgacaacatattttttcattgattcaacgtattgt |
211 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||||||| | |||||||| |
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| T |
28385616 |
cacaaaagagaaataatactgtttggccgtggcaaagttatttatagaaatatgaacccaataggtgacaacatatttttgcattgattgagcgtattgt |
28385517 |
T |
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| Q |
212 |
aggatcaa |
219 |
Q |
| |
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|||||||| |
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| T |
28385516 |
aggatcaa |
28385509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 28394638 - 28394603
Alignment:
| Q |
1 |
tgtttctccccttttgcatgtaaaaaatagaatgtg |
36 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
28394638 |
tgtttctccccttttgcatgtaaaaaatagaatgtg |
28394603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 28390882 - 28390845
Alignment:
| Q |
114 |
cacaaaagagaaataatattgtttggtcgtggcaaagt |
151 |
Q |
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| T |
28390882 |
cacaaaagagaaataatattgtttggccgtggcaaagt |
28390845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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