View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19002_low_11 (Length: 345)
Name: NF19002_low_11
Description: NF19002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19002_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 42303620 - 42303307
Alignment:
| Q |
19 |
tcaacggaaatgttggtgatatgtagtgtttgggttgatgcatatgttaaagagctgcactaacttttttagtttaagagcacatgttaaggaatctaca |
118 |
Q |
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| T |
42303620 |
tcaacggaaatgttggtgatatgtagtgtttgggttgatgcatatgttaaagagctgcactaacttttttagtttaagagcacatgttaaggaatctaca |
42303521 |
T |
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| Q |
119 |
aacagtagatgtcttgaagnnnnnnnn----caatttttaactttttgagaaatagaatgcacaatttccaatacaaaatttctattttagtacactaac |
214 |
Q |
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| T |
42303520 |
aacagtagatgtcttgaaaaaaaaaaaaaaacaatttttaactttttgagaaatagaatgcacaatttccaatacaaaatttctattttagtacactaac |
42303421 |
T |
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| Q |
215 |
aagtgtcataagggtacatgttatcatttccctagattaaaatgtgacacaatagttatatgttttgtgcatgttgaaagtagaacatgccatgacatag |
314 |
Q |
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| T |
42303420 |
aagtgtcataagggtacatgttatcatttccctagattaaaatgtgacacaatagttatatgttttgtgcatgttgaaagtagaacatgccatgacatag |
42303321 |
T |
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| Q |
315 |
taaaaggaaatggt |
328 |
Q |
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| T |
42303320 |
taaaaggtaatggt |
42303307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 38816813 - 38816748
Alignment:
| Q |
151 |
tttaactttttgagaaatagaat-gcacaatttccaatacaaaatttctattttagtacactaaca |
215 |
Q |
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| T |
38816813 |
tttaacttgttgagaaataaattagcacaatttccaatataaaatttctattttagtacattaaca |
38816748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 5330397 - 5330454
Alignment:
| Q |
146 |
caatttttaactttttgagaaatagaatgcacaatttccaatacaaaatttctatttt |
203 |
Q |
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| T |
5330397 |
caatttttaacttttaaagaaatggaatgcataatttgcaatacaagatttctatttt |
5330454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 34084137 - 34084091
Alignment:
| Q |
201 |
tttagtacactaacaagtgtcataagggtacatgttatcatttccct |
247 |
Q |
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| T |
34084137 |
tttagcacactaacaagtgtcctaagggcacatgttaccatttccct |
34084091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 49985917 - 49985962
Alignment:
| Q |
268 |
agttatatgttttgtgcatgttgaaagtagaacatgccatgacata |
313 |
Q |
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| T |
49985917 |
agttctatgttttgtgcatgctgaaagtagaacaaaccatgacata |
49985962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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