View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19002_low_12 (Length: 338)
Name: NF19002_low_12
Description: NF19002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19002_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 2153962 - 2153643
Alignment:
| Q |
1 |
tactattgtcgttgtggaccatattgtgtaagtacatttgtatgtgctcttagagtgtgagatgtgtactttggtgagttgacggaaacaaactcgccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||| |
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| T |
2153962 |
tactattgtcgttgtggaccatattgtgtaagtacatttgtatgtgctcttagagtgtgagacgtgtactttgatgagttgtcggaaacaaactcgccaa |
2153863 |
T |
|
| Q |
101 |
aatctcgtaattattacaagattccttttcatagtgnnnnnnngaacaggtttagtgaactgagacttataatgtttagtctttttgtaaatctcctatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2153862 |
aatctcgtaattattacaagattccttttcatagtgtttttt-gaacaagttttgtgaactgagccttataatgtttagtctttttgtaaatctcctatt |
2153764 |
T |
|
| Q |
201 |
tatgaagcattgactttgaagatttgattgaaatatttgttcttatattgttttattaaactaaaccttgcacagagttggacttgaacttccaacaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2153763 |
tatgaagcattgactttgaagatttgattgaaatatttgttcttatattgttttattaaactaaaccttgcacagagttggacttgaacttccaacaatt |
2153664 |
T |
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| Q |
301 |
gaagttagatttgaggatata |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
2153663 |
gaagttagatttgaggatata |
2153643 |
T |
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