View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19002_low_15 (Length: 316)
Name: NF19002_low_15
Description: NF19002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19002_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 169 - 296
Target Start/End: Original strand, 51000577 - 51000704
Alignment:
| Q |
169 |
gcatacctctccgtaatgcacgaggacaatgtccttgaactgcctgcaattcaaaagaatatgtttaagttgattttttattttatttatcactataacc |
268 |
Q |
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| T |
51000577 |
gcatacctctccgtaatgcacgaggacaatgtccttgaactgcctgcaattcaaaagaatatgtttaagttgattttttattttatttatcactataacc |
51000676 |
T |
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| Q |
269 |
atgtaaaaagggcatgaacacatggtgc |
296 |
Q |
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| T |
51000677 |
atgtaaaaagggcatgaacacatggtgc |
51000704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 51000416 - 51000528
Alignment:
| Q |
10 |
tcataggaaccatgcttaaaagaaagatagcacagaaaatcaacacaattgtgcttgatattactaagattaaccagaattctggttccaatgtagcatc |
109 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51000416 |
tcataggaaacatgcttaaaagaaagatagcacagaaaatcaacacaattgtgcttgatattactaagattaaccagaattctggttccaatgtagcatc |
51000515 |
T |
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| Q |
110 |
atgtcatctgcat |
122 |
Q |
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| T |
51000516 |
atgtcatctgcat |
51000528 |
T |
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