View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19002_low_16 (Length: 295)

Name: NF19002_low_16
Description: NF19002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19002_low_16
NF19002_low_16
[»] chr3 (7 HSPs)
chr3 (1-277)||(1091288-1091565)
chr3 (10-200)||(1077493-1077677)
chr3 (1-178)||(1050612-1050784)
chr3 (21-134)||(1107789-1107902)
chr3 (229-277)||(1077448-1077496)
chr3 (231-274)||(1050548-1050591)
chr3 (229-277)||(1107679-1107727)
[»] chr5 (2 HSPs)
chr5 (48-139)||(28433362-28433453)
chr5 (51-137)||(28420128-28420214)
[»] chr8 (4 HSPs)
chr8 (17-137)||(23361434-23361554)
chr8 (25-139)||(23555846-23555960)
chr8 (34-85)||(4130252-4130303)
chr8 (36-134)||(4120173-4120271)
[»] scaffold0090 (1 HSPs)
scaffold0090 (16-137)||(8039-8160)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 1091565 - 1091288
Alignment:
Q  1 tgttacttggaaatgtaagtcctttatttttctgtccacttacaatctctagcaataatacaccaaagctaaatacatcagattttgtggagaatagtcc 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||    
T  1091565 tgttgcttggaaatgtaagtcctttatttttctgtccacttacaatctctagtaataatacaccaaagctaaatacatcagattttgtagaaaatagtcc 1091466  T
Q  101 atcaatggcgtattctggagccatataaccactgaaaagtgtacatatgagttaattatatttgaattattt-ttttcttcaaataacttcaaaatatca 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1091465 atcaatggcgtattctggagccatataaccactgaaaagtgtacacatgagttaattatatttgaattattttttttcttcaaataacttcaaaatatca 1091366  T
Q  200 aggattcttcnnnnnnnnnnnnnnnnnnntcaatgaaactacttactgtgttccaactactctttttgtattcccctc 277  Q
    ||||||||||                   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1091365 aggattcttcaaaaaataaaaaataaaaatcaatgaaactacttactgtgttccaactactctttttgtattcccctc 1091288  T

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Target: chr3; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 1077677 - 1077493
Alignment:
Q  10 gaaatgtaagtcctttatttttctgtccacttacaatctctagcaataatacaccaaagctaaatacatcagattttgtggagaatagtccatcaatggc 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1077677 gaaatgtaagtcctttatttttatgtccacttacaatctctagcaataatacgccaaagctaaatacatcagattttgtggagaatagtccatcaatggc 1077578  T
Q  110 gtattctggagccatataaccactgaaaagtgtacatatgagttaattatatttgaattatttttttcttcaaataacttcaaaatatcaa 200  Q
     |||||||||||||||||||||||||||||| |||| ||||||||     |||||||||| |||||||||  |||||||| ||||||||||    
T  1077577 atattctggagccatataaccactgaaaagtttacaaatgagtta-----atttgaatta-ttttttctttcaataacttaaaaatatcaa 1077493  T

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Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 1050784 - 1050612
Alignment:
Q  1 tgttacttggaaatgtaagtcctttatttttctgtccacttacaatctctagcaataatacaccaaagctaaatacatcagattttgtggagaatagtcc 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||    
T  1050784 tgttgcttggaaatgtaagtcctttatttttctgtccacttacaatctctagcaataatacgccaaagctaaatacatcagattttgtggagaaaagccc 1050685  T
Q  101 atcaatggcgtattctggagccatataaccactgaaaagtgtacatatgagttaattatatttgaattatttttttct 178  Q
    ||||||||| ||||||||||||||||||||||||||||||||| | ||||||||     |||||||||||||||||||    
T  1050684 atcaatggcatattctggagccatataaccactgaaaagtgtataaatgagtta-----atttgaattatttttttct 1050612  T

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Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 1107902 - 1107789
Alignment:
Q  21 cctttatttttctgtccacttacaatctctagcaataatacaccaaagctaaatacatcagattttgtggagaatagtccatcaatggcgtattctggag 120  Q
    ||||||||||||  |||||||||||||||||||| |||||  ||||||||||||||||| |||||| |||||||||  ||||||||||| || || ||||    
T  1107902 cctttatttttccttccacttacaatctctagcagtaatatgccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcgggag 1107803  T
Q  121 ccatataaccactg 134  Q
    ||||||||||||||    
T  1107802 ccatataaccactg 1107789  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 1077496 - 1077448
Alignment:
Q  229 tcaatgaaactacttactgtgttccaactactctttttgtattcccctc 277  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1077496 tcaatgaaactacttactgtgttccaactactctgtttgtattcccctc 1077448  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 1050591 - 1050548
Alignment:
Q  231 aatgaaactacttactgtgttccaactactctttttgtattccc 274  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  1050591 aatgaaactacttactgtgttccaaccactctttttgtattccc 1050548  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 1107727 - 1107679
Alignment:
Q  229 tcaatgaaactacttactgtgttccaactactctttttgtattcccctc 277  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||||||||    
T  1107727 tcaatgaaagtacttactgtgtcccaactactctgtttgtattcccctc 1107679  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 28433453 - 28433362
Alignment:
Q  48 tctagcaataatacaccaaagctaaatacatcagattttgtggagaatagtccatcaatggcgtattctggagccatataaccactgaaaag 139  Q
    |||||||||||||||||||||||||||||||| ||||||   ||||||| ||||| |||  | |||||||| ||||||||||| ||||||||    
T  28433453 tctagcaataatacaccaaagctaaatacatctgattttacagagaataatccatgaatcacatattctggtgccatataaccgctgaaaag 28433362  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 28420214 - 28420128
Alignment:
Q  51 agcaataatacaccaaagctaaatacatcagattttgtggagaatagtccatcaatggcgtattctggagccatataaccactgaaa 137  Q
    ||||||||||| ||||||||||||||||| |||||  | ||||| ||||||| |||  | ||||| || ||||||||||| ||||||    
T  28420214 agcaataatacgccaaagctaaatacatctgatttaatagagaaaagtccatgaatcacatattcgggtgccatataaccgctgaaa 28420128  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 23361554 - 23361434
Alignment:
Q  17 aagtcctttatttttctgtccacttacaatctctagcaataatacaccaaagctaaatacatcagattttgtggagaatagtccatcaatggcgtattct 116  Q
    ||||||||||||| ||| |||| ||| ||||||||  ||||| |  ||||||||| |||||||||||||  |||||||||  ||||| || || |||||     
T  23361554 aagtcctttatttctctttccatttataatctctaataataaaattccaaagctatatacatcagatttgatggagaatatcccatcgatcgcatattca 23361455  T
Q  117 ggagccatataaccactgaaa 137  Q
    || ||||||||||||||||||    
T  23361454 ggtgccatataaccactgaaa 23361434  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 23555960 - 23555846
Alignment:
Q  25 tatttttctgtccacttacaatctctagcaataatacaccaaagctaaatacatcagattttgtggagaatagtccatcaatggcgtattctggagccat 124  Q
    |||||||| ||||||||| ||  || || | |||||| ||||| ||||||||||| |||||  | ||||||| |||||| ||||| ||||| || |||||    
T  23555960 tatttttcagtccacttataagttcgaggactaatacgccaaaactaaatacatctgatttaatagagaataatccatcgatggcatattcaggtgccat 23555861  T
Q  125 ataaccactgaaaag 139  Q
    |||||||||||||||    
T  23555860 ataaccactgaaaag 23555846  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 4130252 - 4130303
Alignment:
Q  34 gtccacttacaatctctagcaataatacaccaaagctaaatacatcagattt 85  Q
    |||| |||||||||||||||||||| |||||||||||| ||||||| |||||    
T  4130252 gtccgcttacaatctctagcaataaaacaccaaagctatatacatctgattt 4130303  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 4120173 - 4120271
Alignment:
Q  36 ccacttacaatctctagcaataatacaccaaagctaaatacatcagattttgtggagaatagtccatcaatggcgtattctggagccatataaccactg 134  Q
    ||||| ||||||||||||||||| || ||||||||| ||||||| |||||    ||||| || || || || || |||||||| | |||||||||||||    
T  4120173 ccactgacaatctctagcaataaaaccccaaagctatatacatctgatttctcagagaaaagcccctccattgcatattctggcggcatataaccactg 4120271  T

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Target: scaffold0090 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 8039 - 8160
Alignment:
Q  16 taagtcctttatttttctgtccacttacaatctctagcaataatacaccaaagctaaatacatcagattttgtggagaatagtccatcaatggcgtattc 115  Q
    ||||| || ||||||||| |||||| | ||| ||||  |||||||| ||||||||||||||||| |||||  | || |||| ||||||| |||| |||||    
T  8039 taagtgctctatttttctttccactgataatttctaataataatacgccaaagctaaatacatctgatttgatagaaaataatccatcagtggcatattc 8138  T
Q  116 tggagccatataaccactgaaa 137  Q
     || |||||||| || ||||||    
T  8139 aggtgccatatagccgctgaaa 8160  T

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