View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19002_low_19 (Length: 273)

Name: NF19002_low_19
Description: NF19002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19002_low_19
NF19002_low_19
[»] chr8 (7 HSPs)
chr8 (12-243)||(38313377-38313608)
chr8 (12-162)||(38308864-38309014)
chr8 (13-162)||(38320962-38321111)
chr8 (15-210)||(38306088-38306283)
chr8 (17-210)||(38325664-38325857)
chr8 (13-219)||(38300160-38300366)
chr8 (13-162)||(38316867-38317016)
[»] chr4 (1 HSPs)
chr4 (13-217)||(38850329-38850533)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 38313608 - 38313377
Alignment:
Q  12 catcatcatacaagtgaagactttcaaacgcacgctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatatctagatg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38313608 catcatcatacaagtgaagactttcaaacgcacgctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatatctagatg 38313509  T
Q  112 caagcgaaccgaactatcaacaccaccaaccttttcaacgcactccttaaaaaatttccatctactcttggaatgccttacaaacaaaatgctctctctg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38313508 caagcgaaccgaactatcaacaccaccaaccttttcaacgcactccttaaaaaatttccatctactcttggaatgccttacaaacaaaatgctctctctg 38313409  T
Q  212 atcttacagacaacactctcaactaggtttaa 243  Q
    |||||||||||||||||||||||||| |||||    
T  38313408 atcttacagacaacactctcaactagttttaa 38313377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 38309014 - 38308864
Alignment:
Q  12 catcatcatacaagtgaagactttcaaacgcacgctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatatctagatg 111  Q
    |||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38309014 catcgtcatacaagtgaagactttcaaatgcaagctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatgtctagatg 38308915  T
Q  112 caagcgaaccgaactatcaacaccaccaaccttttcaacgcactccttaaa 162  Q
    ||| ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  38308914 caaacgaacagaactatcaacaccaccaaccttttcaatgcactccttaaa 38308864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 38321111 - 38320962
Alignment:
Q  13 atcatcatacaagtgaagactttcaaacgcacgctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatatctagatgc 112  Q
    |||||||||||||||||||||||||||| ||| |  ||||||||||||||||| ||||||||||||||||||||||||  |||||||||| || ||||||    
T  38321111 atcatcatacaagtgaagactttcaaacacacacctatatttaagagcactttcaagcatcaaataagttgagttcacagtcatagacatgtccagatgc 38321012  T
Q  113 aagcgaaccgaactatcaacaccaccaaccttttcaacgcactccttaaa 162  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38321011 aagcgaactgaactatcaacaccaccaaccttttcaacgcactccttaaa 38320962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 38306283 - 38306088
Alignment:
Q  15 catcatacaagtgaagactttcaaacgcacgctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatatctagatgcaa 114  Q
    ||||||||||||||| |||||||||| || | ||||||||||||||||| |  |||||||||||||||||||||||  |||||||||| || | ||||||    
T  38306283 catcatacaagtgaaaactttcaaacacatgttgatatttaagagcactatcgagcatcaaataagttgagttcacagtcatagacatgtccatatgcaa 38306184  T
Q  115 gcgaaccgaactatcaacaccaccaaccttttcaacgcactccttaaaaaatttccatctactcttggaatgccttacaaacaaaatgctctctct 210  Q
    |||||| ||||| |||| ||||||||||||||||||||||||||||||   ||||| ||||||||| |||| ||| |||||||| |||||||||||    
T  38306183 gcgaactgaactgtcaataccaccaaccttttcaacgcactccttaaattttttccttctactctttgaatccctcacaaacaagatgctctctct 38306088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 38325857 - 38325664
Alignment:
Q  17 tcatacaagtgaagactttcaaacgcacgctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatatctagatgcaagc 116  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||  |||||||||   ||  |||||||||    
T  38325857 tcatacaagtgaagactttcaaacacacgccgatatttaagagcactttcaagcatcaaataagttgagttcagactcatagacgagtcctgatgcaagc 38325758  T
Q  117 gaaccgaactatcaacaccaccaaccttttcaacgcactccttaaaaaatttccatctactcttggaatgccttacaaacaaaatgctctctct 210  Q
    |||| |||||||| ||||||||||||||||||| ||| ||||||||    | || ||||||||| |||||||| |||||||  |||||||||||    
T  38325757 gaacggaactatcgacaccaccaaccttttcaatgcattccttaaatttctcccttctactctttgaatgcctcacaaacatgatgctctctct 38325664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 38300366 - 38300160
Alignment:
Q  13 atcatcatacaagtgaagactttcaaacgcacgctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatatctagatgc 112  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||  |||||||||||||||||||  ||| | | || ||||||    
T  38300366 atcatcatacaagtgaagactttcaaacacacgccgatatttaagagcactttcaagcattgaataagttgagttcactcttttaggcgtgtccagatgc 38300267  T
Q  113 aagcgaaccgaactatcaacaccaccaaccttttcaacgcactccttaaaaaatttccatctactcttggaatgccttacaaacaaaatgctctctctga 212  Q
    |||||||| |||| ||||||||||||||||||| |||  |||||||||||   || || || |||||| |||||||| |||||||  ||||| ||||| |    
T  38300266 aagcgaacggaacaatcaacaccaccaacctttgcaatacactccttaaatttttcccttccactctttgaatgcctcacaaacatgatgctatctctaa 38300167  T
Q  213 tcttaca 219  Q
    | |||||    
T  38300166 ttttaca 38300160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 38317016 - 38316867
Alignment:
Q  13 atcatcatacaagtgaagactttcaaacgcacgctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatatctagatgc 112  Q
    ||||||||||||||||| |||||||||  || || |||||||||||||||||| |||||||| ||||||||||||||  ||||||||||| || ||||||    
T  38317016 atcatcatacaagtgaaaactttcaaatacatgccgatatttaagagcactttcaagcatcacataagttgagttcagactcatagacatgtccagatgc 38316917  T
Q  113 aagcgaaccgaactatcaacaccaccaaccttttcaacgcactccttaaa 162  Q
    | || ||| |||||||||||||||||||||||||||| ||||||||||||    
T  38316916 aggcaaacagaactatcaacaccaccaaccttttcaatgcactccttaaa 38316867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 38850329 - 38850533
Alignment:
Q  13 atcatcatacaagtgaagactttcaaacgcacgctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatatctagatgc 112  Q
    ||||||||||||||||| |||||||||||||| | | ||||||||||| |||| ||||| || |||||||||  |||  |||||||| ||||| | |||     
T  38850329 atcatcatacaagtgaaaactttcaaacgcacaccggtatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgt 38850428  T
Q  113 aagcgaaccgaactatcaacaccaccaaccttttcaacgcactccttaaaaaatttccatctactcttggaatgccttacaaacaaaatgctctctctga 212  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||||||   || ||  |||||||| |||||||| |||||||  || ||||||||||    
T  38850429 aagtgaaccgaactatcaacaccaccaaccttttcaaagcactccttaaatttttccctcctactctttgaatgcctcacaaacatgatactctctctga 38850528  T
Q  213 tctta 217  Q
    |||||    
T  38850529 tctta 38850533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University